Variant report

Variant	rs1255741
Chromosome Location	chr14:64029781-64029782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11158491	0.82[ASW][hapmap]
rs1255718	0.83[ASW][hapmap];0.84[MKK][hapmap];0.81[TSI][hapmap]
rs1255721	0.83[ASW][hapmap];0.81[TSI][hapmap]
rs1255722	0.91[ASW][hapmap];0.83[TSI][hapmap]
rs1255733	0.83[EUR][1000 genomes]
rs1255737	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1255739	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1255742	0.91[ASW][hapmap];1.00[CEU][hapmap];0.80[CHB][hapmap];0.89[GIH][hapmap];0.88[MEX][hapmap];0.80[MKK][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1255743	0.96[CEU][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes]
rs1255746	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1271563	0.83[ASW][hapmap];0.84[MKK][hapmap];0.81[TSI][hapmap]
rs2754223	0.91[ASW][hapmap]
rs964954	0.83[ASW][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv974442	chr14:64024425-64046914	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1255741	PRKCH	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64027600-64030200	Weak transcription	Placenta	Placenta
2	chr14:64029000-64029800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr14:64029200-64032400	Enhancers	Hela-S3	cervix
4	chr14:64029400-64031600	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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