Variant report

Variant	rs964954
Chromosome Location	chr14:63980731-63980732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:63976892..63978457-chr14:63980086..63982121,2	MCF-7	breast:
2	chr14:63979789..63982079-chr14:63983886..63985604,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10129891	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1152449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12232206	0.94[ASN][1000 genomes]
rs1255631	0.81[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1255635	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1255638	0.86[CEU][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1255639	0.86[CEU][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1255718	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1255720	0.90[CHB][hapmap]
rs1255721	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1255722	0.95[CEU][hapmap];0.93[GIH][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1255723	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1255730	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1255733	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1255737	0.95[ASN][1000 genomes]
rs1255739	0.81[ASN][1000 genomes]
rs1255741	0.83[ASW][hapmap];0.81[TSI][hapmap]
rs1255742	0.92[ASW][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.80[MKK][hapmap];0.83[TSI][hapmap];0.81[ASN][1000 genomes]
rs1255743	0.83[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs1255746	0.91[ASN][1000 genomes]
rs1255757	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1255771	0.81[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.88[GIH][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1255776	0.81[EUR][1000 genomes]
rs1255777	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1255788	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1271563	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2754223	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6573522	0.86[CEU][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7143992	0.95[ASN][1000 genomes]
rs7158805	0.81[EUR][1000 genomes]
rs8009717	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv976815	chr14:63978344-63982055	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63951000-64003200	Weak transcription	Ovary	ovary
2	chr14:63960000-63983400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr14:63960000-64005000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:63960200-63983200	Weak transcription	NH-A	brain
5	chr14:63960200-64008600	Weak transcription	HSMMtube	muscle
6	chr14:63960400-63991000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:63960600-63987000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:63962800-63990600	Weak transcription	Right Ventricle	heart
9	chr14:63964000-63990400	Weak transcription	Fetal Kidney	kidney
10	chr14:63964200-63981000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:63966600-63983200	Weak transcription	Adipose Nuclei	Adipose
12	chr14:63966800-63983200	Weak transcription	Osteobl	bone
13	chr14:63967600-63986600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr14:63967600-63996400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr14:63969200-63983200	Weak transcription	Left Ventricle	heart
16	chr14:63969200-63984800	Weak transcription	Lung	lung
17	chr14:63969200-63991200	Weak transcription	Right Atrium	heart
18	chr14:63970200-64008600	Weak transcription	Aorta	Aorta
19	chr14:63970600-63980800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr14:63970800-63990600	Weak transcription	Brain Anterior Caudate	brain
21	chr14:63971200-64000800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr14:63972000-64000200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr14:63972200-64003400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr14:63972400-63983200	Weak transcription	Hela-S3	cervix
25	chr14:63972400-64002800	Weak transcription	HMEC	breast
26	chr14:63972600-63987000	Weak transcription	NHEK	skin
27	chr14:63972600-64008800	Weak transcription	Esophagus	oesophagus
28	chr14:63972800-63983000	Weak transcription	A549	lung
29	chr14:63972800-63983200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:63974000-63987000	Weak transcription	Liver	Liver
31	chr14:63974000-63989200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr14:63974000-63990600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr14:63974800-64007800	Weak transcription	Fetal Brain Male	brain
34	chr14:63975000-63983200	Weak transcription	Spleen	Spleen
35	chr14:63975000-63990600	Weak transcription	Brain Angular Gyrus	brain
36	chr14:63975000-63991200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:63975000-64008800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr14:63975200-64000600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr14:63975600-64005800	Weak transcription	K562	blood
40	chr14:63976200-63981800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr14:63976200-63982600	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr14:63976800-63982000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr14:63977200-63984800	Weak transcription	Fetal Intestine Small	intestine
44	chr14:63977200-64002400	Weak transcription	HSMM	muscle
45	chr14:63977400-63989200	Weak transcription	Fetal Intestine Large	intestine
46	chr14:63978000-63986800	Weak transcription	Fetal Muscle Leg	muscle
47	chr14:63978000-63991000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr14:63978200-63981000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr14:63978200-63986000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr14:63978200-63986200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links