Variant report

Variant	rs12232206
Chromosome Location	chr14:64021729-64021730
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64020827..64024585-chr14:64024832..64027804,4	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1152449	0.94[ASN][1000 genomes]
rs12323618	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12385901	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1255637	0.81[EUR][1000 genomes]
rs1255641	0.81[EUR][1000 genomes]
rs1255718	0.95[ASN][1000 genomes]
rs1255721	0.95[ASN][1000 genomes]
rs1255723	0.93[ASN][1000 genomes]
rs1255731	0.80[ASN][1000 genomes]
rs1255733	0.98[ASN][1000 genomes]
rs1255737	0.99[ASN][1000 genomes]
rs1255739	0.86[ASN][1000 genomes]
rs1255742	0.86[ASN][1000 genomes]
rs1255743	0.88[ASN][1000 genomes]
rs1255746	0.94[ASN][1000 genomes]
rs1255777	0.95[ASN][1000 genomes]
rs1255788	0.95[ASN][1000 genomes]
rs1271562	0.81[EUR][1000 genomes]
rs1271563	0.95[ASN][1000 genomes]
rs2356705	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28834707	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6573523	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7143992	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7151460	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs964954	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64021600-64021800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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