Variant report

Variant	rs11158561
Chromosome Location	chr14:65292670-65292671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1012376	0.80[CEU][hapmap]
rs10136659	1.00[JPT][hapmap]
rs11622962	0.80[CEU][hapmap]
rs12587480	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4899148	0.80[CEU][hapmap]
rs4899149	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4902330	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693408	chr14:65292670-65358576	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11158561	CHURC1	Cis_1M	lymphoblastoid	RTeQTL
rs11158561	CHURC1	cis	lymphoblastoid	seeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65289600-65293600	Enhancers	Fetal Heart	heart
2	chr14:65289800-65295200	Enhancers	Left Ventricle	heart
3	chr14:65290000-65295200	Enhancers	Psoas Muscle	Psoas
4	chr14:65290400-65292800	Weak transcription	Gastric	stomach
5	chr14:65290400-65293400	Weak transcription	Spleen	Spleen
6	chr14:65290600-65294400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:65291000-65295600	Enhancers	Fetal Muscle Leg	muscle
8	chr14:65291600-65296000	Enhancers	K562	blood
9	chr14:65292000-65292800	Weak transcription	Right Atrium	heart
10	chr14:65292000-65293000	Enhancers	Colon Smooth Muscle	Colon
11	chr14:65292000-65297800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:65292200-65292800	Bivalent Enhancer	Fetal Stomach	stomach
13	chr14:65292200-65292800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr14:65292200-65293000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr14:65292400-65292800	Weak transcription	Right Ventricle	heart
16	chr14:65292400-65293200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr14:65292400-65294800	Enhancers	Fetal Muscle Trunk	muscle
18	chr14:65292600-65293800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr14:65292600-65297800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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