Variant report

Variant	rs4899149
Chromosome Location	chr14:65326897-65326898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65326776..65328848-chr14:65344777..65346303,2	K562	blood:
2	chr14:65315035..65317899-chr14:65322274..65327051,4	MCF-7	breast:
3	chr14:65315994..65317932-chr14:65325129..65327129,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10136659	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10138545	1.00[ASN][1000 genomes]
rs11158561	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11845923	1.00[ASN][1000 genomes]
rs17102113	1.00[MEX][hapmap]
rs17102119	0.88[MEX][hapmap]
rs17880758	1.00[ASN][1000 genomes]
rs4899147	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4902328	1.00[ASN][1000 genomes]
rs4902330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4902342	1.00[ASN][1000 genomes]
rs74056628	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693408	chr14:65292670-65358576	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4899149	RAB15	cis	lymphoblastoid	seeQTL

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65319400-65332600	Weak transcription	Right Atrium	heart
2	chr14:65320200-65328400	Weak transcription	Fetal Heart	heart
3	chr14:65322800-65328200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:65323000-65330000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:65323600-65328400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:65324600-65327400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr14:65325400-65327000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr14:65325400-65328200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:65325400-65328400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:65325400-65328400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr14:65325400-65328600	Weak transcription	Left Ventricle	heart
12	chr14:65325600-65327000	Weak transcription	Psoas Muscle	Psoas
13	chr14:65325600-65328200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr14:65325600-65328200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:65325600-65328200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:65325600-65328400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:65325600-65328400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr14:65325600-65331800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr14:65325600-65332200	Weak transcription	Right Ventricle	heart
20	chr14:65325800-65332000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr14:65326800-65327200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr14:65326800-65327200	Enhancers	H9 Cell Line	embryonic stem cell
23	chr14:65326800-65327200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr14:65326800-65327200	Enhancers	Fetal Muscle Leg	muscle
25	chr14:65326800-65327400	Enhancers	K562	blood

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