Variant report

Variant	rs17880758
Chromosome Location	chr14:65409096-65409097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65407129..65411344-chr14:65424634..65427852,4	MCF-7	breast:
2	chr14:65407165..65409389-chr14:65411251..65413100,2	K562	blood:
3	chr14:65408375..65411114-chr14:65437552..65439159,4	MCF-7	breast:
4	chr14:65380406..65382948-chr14:65406634..65410888,4	MCF-7	breast:
5	chr14:65409026..65413439-chr14:65416032..65420633,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258289	Chromatin interaction
ENSG00000125954	Chromatin interaction
ENSG00000139998	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10136659	1.00[ASN][1000 genomes]
rs10138506	0.86[AMR][1000 genomes]
rs10138545	1.00[ASN][1000 genomes]
rs10138667	0.87[AMR][1000 genomes]
rs1127968	0.86[AMR][1000 genomes]
rs11845923	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3949938	0.86[AMR][1000 genomes]
rs4899149	1.00[ASN][1000 genomes]
rs4902328	1.00[ASN][1000 genomes]
rs4902330	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902342	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159870	0.84[AMR][1000 genomes]
rs74056628	1.00[ASN][1000 genomes]
rs9323457	0.81[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17880758	CHURC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65382000-65409200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:65382400-65409200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:65382400-65417400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
5	chr14:65383000-65419400	Weak transcription	K562	blood
6	chr14:65386400-65409200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr14:65390600-65409600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr14:65390600-65409800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr14:65393400-65422200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:65393800-65409200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr14:65396000-65409600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr14:65396000-65410400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:65396000-65413600	Weak transcription	Fetal Brain Female	brain
14	chr14:65396000-65417800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr14:65397400-65411200	Strong transcription	Dnd41	blood
16	chr14:65399000-65428000	Weak transcription	NHLF	lung
17	chr14:65399200-65412400	Weak transcription	Brain Germinal Matrix	brain
18	chr14:65400000-65410400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr14:65400000-65417000	Weak transcription	Colon Smooth Muscle	Colon
20	chr14:65400400-65415200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr14:65400600-65409200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr14:65400800-65410200	Weak transcription	Fetal Lung	lung
23	chr14:65401400-65409200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr14:65401400-65409400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr14:65401400-65432200	Weak transcription	HUVEC	blood vessel
26	chr14:65401600-65412400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr14:65401600-65413200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:65401600-65435000	Weak transcription	NH-A	brain
29	chr14:65401800-65409400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr14:65401800-65412600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr14:65402400-65415000	Weak transcription	Osteobl	bone
32	chr14:65402600-65410200	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr14:65403000-65412800	Strong transcription	Thymus	Thymus
34	chr14:65403400-65414600	Weak transcription	Left Ventricle	heart
35	chr14:65404000-65409600	Strong transcription	Primary T cells from cord blood	blood
36	chr14:65404000-65410600	Enhancers	Pancreas	Pancrea
37	chr14:65404000-65412200	Strong transcription	Fetal Thymus	thymus
38	chr14:65404400-65410200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr14:65404400-65410400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr14:65404400-65414200	Weak transcription	Right Ventricle	heart
41	chr14:65404400-65415000	Weak transcription	Brain Hippocampus Middle	brain
42	chr14:65404400-65416600	Weak transcription	Psoas Muscle	Psoas
43	chr14:65404400-65419600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr14:65404600-65410400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr14:65404600-65410600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr14:65404600-65412200	Weak transcription	Brain Anterior Caudate	brain
47	chr14:65404600-65413400	Weak transcription	HSMMtube	muscle
48	chr14:65404600-65414600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr14:65404600-65415600	Weak transcription	Fetal Heart	heart
50	chr14:65404600-65418200	Weak transcription	Brain Angular Gyrus	brain

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