Variant report

Variant	rs10138506
Chromosome Location	chr14:65388243-65388244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65382279..65385178-chr14:65385744..65388338,3	K562	blood:
2	chr14:65387204..65389261-chr14:65402444..65405344,2	MCF-7	breast:
3	chr14:65386742..65389344-chr14:65389891..65391402,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258289	Chromatin interaction
ENSG00000125954	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10138667	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10141986	0.92[GIH][hapmap]
rs10151701	0.92[GIH][hapmap]
rs11158569	0.86[GIH][hapmap]
rs1127968	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11845923	0.90[AMR][1000 genomes]
rs17102318	0.88[CHD][hapmap]
rs17880758	0.86[AMR][1000 genomes]
rs2412065	0.92[GIH][hapmap]
rs3949938	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899153	0.92[GIH][hapmap]
rs4902330	0.90[AMR][1000 genomes]
rs4902336	0.92[GIH][hapmap]
rs4902342	0.93[AMR][1000 genomes]
rs7143432	0.92[GIH][hapmap]
rs7144811	0.92[GIH][hapmap]
rs7146475	1.00[JPT][hapmap]
rs7159870	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161483	1.00[JPT][hapmap]
rs9323457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10138506	FNTB	cis	lymphoblastoid	seeQTL
rs10138506	CHURC1	cis	lymphoblastoid	seeQTL
rs10138506	CHURC1	cis	multi-tissue	Pritchard
rs10138506	CHURC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65382000-65399200	Weak transcription	Esophagus	oesophagus
2	chr14:65382000-65409200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:65382200-65390800	Weak transcription	Placenta	Placenta
4	chr14:65382200-65391200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:65382200-65391600	Weak transcription	Ovary	ovary
6	chr14:65382200-65394800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:65382200-65395600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:65382400-65388400	Weak transcription	Fetal Thymus	thymus
9	chr14:65382400-65390600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:65382400-65390600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr14:65382400-65390600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr14:65382400-65390600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:65382400-65390600	Weak transcription	Fetal Intestine Large	intestine
14	chr14:65382400-65390800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr14:65382400-65390800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:65382400-65391000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:65382400-65391200	Weak transcription	Fetal Brain Female	brain
18	chr14:65382400-65391400	Weak transcription	Colonic Mucosa	Colon
19	chr14:65382400-65391600	Weak transcription	Fetal Stomach	stomach
20	chr14:65382400-65394000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr14:65382400-65409200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr14:65382400-65417400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
24	chr14:65382600-65391200	Weak transcription	Fetal Kidney	kidney
25	chr14:65382800-65390600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr14:65382800-65390600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr14:65382800-65390600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr14:65382800-65390600	Weak transcription	Fetal Muscle Leg	muscle
29	chr14:65382800-65390800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr14:65382800-65390800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr14:65382800-65390800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr14:65382800-65390800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr14:65382800-65390800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr14:65382800-65390800	Weak transcription	NH-A	brain
35	chr14:65382800-65391000	Weak transcription	Brain Germinal Matrix	brain
36	chr14:65382800-65391200	Weak transcription	Brain Substantia Nigra	brain
37	chr14:65382800-65391400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr14:65382800-65392000	Weak transcription	Fetal Intestine Small	intestine
39	chr14:65382800-65393000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr14:65382800-65393000	Weak transcription	Right Ventricle	heart
41	chr14:65382800-65393000	Weak transcription	NHLF	lung
42	chr14:65382800-65394400	Weak transcription	Small Intestine	intestine
43	chr14:65382800-65394600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr14:65382800-65404200	Weak transcription	Stomach Mucosa	stomach
45	chr14:65383000-65388800	Enhancers	Primary T cells from cord blood	blood
46	chr14:65383000-65390000	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr14:65383000-65390000	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr14:65383000-65390400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr14:65383000-65390600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr14:65383000-65390600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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