Variant report

Variant	rs4902342
Chromosome Location	chr14:65396052-65396053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65395801..65398640-chr14:65409977..65412797,2	K562	blood:
2	chr14:65379584..65383779-chr14:65391377..65398715,8	MCF-7	breast:
3	chr14:65394304..65397990-chr14:65402248..65406876,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258289	Chromatin interaction
ENSG00000125954	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10136659	1.00[ASN][1000 genomes]
rs10138506	0.93[AMR][1000 genomes]
rs10138545	1.00[ASN][1000 genomes]
rs10138667	0.81[AMR][1000 genomes]
rs1127968	0.93[AMR][1000 genomes]
rs11845923	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17880758	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3949938	0.93[AMR][1000 genomes]
rs4899149	1.00[ASN][1000 genomes]
rs4902328	1.00[ASN][1000 genomes]
rs4902330	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159870	0.90[AMR][1000 genomes]
rs74056628	1.00[ASN][1000 genomes]
rs9323457	0.87[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4902342	CHURC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65382000-65399200	Weak transcription	Esophagus	oesophagus
2	chr14:65382000-65409200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:65382400-65409200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:65382400-65417400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
6	chr14:65382800-65404200	Weak transcription	Stomach Mucosa	stomach
7	chr14:65383000-65419400	Weak transcription	K562	blood
8	chr14:65383800-65403800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr14:65384400-65404800	Weak transcription	Gastric	stomach
10	chr14:65386400-65409200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr14:65390000-65396400	Strong transcription	HSMM	muscle
12	chr14:65390200-65399200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:65390400-65396200	Strong transcription	Liver	Liver
14	chr14:65390400-65398000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:65390600-65396200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:65390600-65396200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr14:65390600-65396200	Strong transcription	Duodenum Mucosa	Duodenum
18	chr14:65390600-65396200	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr14:65390600-65396400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr14:65390600-65396600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:65390600-65396600	Strong transcription	Fetal Muscle Leg	muscle
22	chr14:65390600-65397200	Strong transcription	Fetal Intestine Large	intestine
23	chr14:65390600-65398000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:65390600-65400400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr14:65390600-65400600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr14:65390600-65401800	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr14:65390600-65409600	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr14:65390600-65409800	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr14:65390800-65396200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr14:65390800-65396200	Strong transcription	Adipose Nuclei	Adipose
31	chr14:65390800-65396200	Strong transcription	Stomach Smooth Muscle	stomach
32	chr14:65390800-65401200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:65390800-65401400	Strong transcription	Placenta	Placenta
34	chr14:65390800-65401600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:65390800-65401800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr14:65390800-65402400	Strong transcription	Osteobl	bone
37	chr14:65390800-65403200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr14:65390800-65407000	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr14:65391200-65396200	Strong transcription	Fetal Lung	lung
40	chr14:65391200-65396200	Strong transcription	Fetal Muscle Trunk	muscle
41	chr14:65391600-65396200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr14:65391800-65400600	Strong transcription	A549	lung
43	chr14:65392800-65401600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr14:65393000-65398200	Strong transcription	Lung	lung
45	chr14:65393200-65396200	Strong transcription	NHEK	skin
46	chr14:65393200-65396600	Strong transcription	NHDF-Ad	bronchial
47	chr14:65393200-65398200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr14:65393400-65400000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr14:65393400-65400800	Weak transcription	Ovary	ovary
50	chr14:65393400-65404000	Weak transcription	Right Ventricle	heart

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