Variant report

Variant	rs11158581
Chromosome Location	chr14:65634318-65634319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65633532..65639308-chr14:65876570..65881222,11	MCF-7	breast:
2	chr14:65630699..65635625-chr14:65877685..65881184,7	MCF-7	breast:
3	chr14:65629176..65630722-chr14:65633709..65636408,2	K562	blood:
4	chr14:65631339..65634911-chr14:65637124..65640936,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11158580	0.80[JPT][hapmap]
rs11621526	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12886660	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1679892	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1760980	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4899166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899167	0.91[CEU][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4902372	0.91[CEU][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8017456	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11158581	RDH11	cis	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65624000-65637000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:65624000-65637200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:65625400-65637200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr14:65626000-65637200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:65626400-65637200	Weak transcription	Esophagus	oesophagus
6	chr14:65627200-65637000	Weak transcription	Primary B cells from cord blood	blood
7	chr14:65631600-65635000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr14:65631600-65635000	Weak transcription	Brain Substantia Nigra	brain
9	chr14:65631600-65635600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:65631800-65637200	Weak transcription	Fetal Intestine Large	intestine
11	chr14:65631800-65637200	Weak transcription	Fetal Intestine Small	intestine
12	chr14:65632000-65636000	Weak transcription	HepG2	liver
13	chr14:65632800-65635600	Enhancers	GM12878-XiMat	blood
14	chr14:65633000-65636000	Enhancers	Brain Hippocampus Middle	brain
15	chr14:65633600-65634600	Enhancers	Primary B cells from peripheral blood	blood
16	chr14:65633800-65636000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr14:65633800-65637600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:65633800-65637600	Weak transcription	Spleen	Spleen
19	chr14:65634000-65634400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr14:65634000-65635600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr14:65634200-65635000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr14:65634200-65637000	Weak transcription	Stomach Mucosa	stomach

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