Variant report

Variant	rs4899166
Chromosome Location	chr14:65635663-65635664
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65633532..65639308-chr14:65876570..65881222,11	MCF-7	breast:
2	chr14:65629176..65630722-chr14:65633709..65636408,2	K562	blood:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11158580	0.82[JPT][hapmap]
rs11158581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621526	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12886660	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1679892	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1760980	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4899167	0.91[CEU][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4902372	0.91[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8017456	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv1802727	chr14:65634797-65646536	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65624000-65637000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:65624000-65637200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:65625400-65637200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr14:65626000-65637200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:65626400-65637200	Weak transcription	Esophagus	oesophagus
6	chr14:65627200-65637000	Weak transcription	Primary B cells from cord blood	blood
7	chr14:65631800-65637200	Weak transcription	Fetal Intestine Large	intestine
8	chr14:65631800-65637200	Weak transcription	Fetal Intestine Small	intestine
9	chr14:65632000-65636000	Weak transcription	HepG2	liver
10	chr14:65633000-65636000	Enhancers	Brain Hippocampus Middle	brain
11	chr14:65633800-65636000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:65633800-65637600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:65633800-65637600	Weak transcription	Spleen	Spleen
14	chr14:65634200-65637000	Weak transcription	Stomach Mucosa	stomach
15	chr14:65635000-65636400	Enhancers	Brain Substantia Nigra	brain
16	chr14:65635400-65636000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:65635600-65635800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr14:65635600-65635800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr14:65635600-65635800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:65635600-65635800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr14:65635600-65635800	Enhancers	Duodenum Mucosa	Duodenum
22	chr14:65635600-65636000	Flanking Active TSS	Brain Angular Gyrus	brain
23	chr14:65635600-65636000	Flanking Active TSS	Brain Anterior Caudate	brain
24	chr14:65635600-65636000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
25	chr14:65635600-65636200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:65635600-65636400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr14:65635600-65636400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr14:65635600-65636400	Enhancers	Adipose Nuclei	Adipose
29	chr14:65635600-65636400	Flanking Active TSS	Brain Cingulate Gyrus	brain
30	chr14:65635600-65636400	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr14:65635600-65636400	Flanking Active TSS	GM12878-XiMat	blood
32	chr14:65635600-65636600	Enhancers	HSMM	muscle
33	chr14:65635600-65637200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr14:65635600-65637200	Enhancers	Primary B cells from peripheral blood	blood
35	chr14:65635600-65637200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr14:65635600-65637200	Enhancers	NH-A	brain
37	chr14:65635600-65637200	Enhancers	NHDF-Ad	bronchial
38	chr14:65635600-65637200	Enhancers	Osteobl	bone

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