Variant report

Variant	rs11158850
Chromosome Location	chr14:70757172-70757173
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 16 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10133925	0.99[ASN][1000 genomes]
rs11158857	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs11623659	0.97[ASN][1000 genomes]
rs12586831	0.84[EUR][1000 genomes]
rs12587911	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12589082	0.99[ASN][1000 genomes]
rs4902803	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902805	0.85[CEU][hapmap]
rs56100317	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56184409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72733742	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:16)

SNP	Gene	Cis/trans	Tissue	Source
rs11158850	FCER2	trans	brain	seeQTL
rs11158850	INHBA	trans	brain	seeQTL
rs11158850	WNT1	trans	brain	seeQTL
rs11158850	SERTAD1	trans	brain	seeQTL
rs11158850	LCN15	trans	brain	seeQTL
rs11158850	ANXA8L2	trans	brain	seeQTL
rs11158850	MEF2A	trans	brain	seeQTL
rs11158850	ADAD2	trans	brain	seeQTL
rs11158850	HS3ST2	trans	brain	seeQTL
rs11158850	DUSP2	trans	brain	seeQTL
rs11158850	PDYN	trans	brain	seeQTL
rs11158850	BEND5	trans	brain	seeQTL
rs11158850	DNAJB5	trans	brain	seeQTL
rs11158850	GPR3	trans	brain	seeQTL
rs11158850	LAMB3	trans	brain	seeQTL
rs11158850	VGLL4	trans	brain	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70749400-70758400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:70750200-70757800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr14:70755800-70757200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:70756200-70757400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr14:70756800-70759200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr14:70756800-70759600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr14:70756800-70760000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr14:70756800-70762000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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