Variant report

Variant	rs11623659
Chromosome Location	chr14:70758384-70758385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10133925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11158850	0.97[ASN][1000 genomes]
rs11628457	0.82[ASN][1000 genomes]
rs12587911	0.89[ASN][1000 genomes]
rs12589082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4902803	0.88[ASN][1000 genomes]
rs56100317	0.83[ASN][1000 genomes]
rs56184409	0.97[ASN][1000 genomes]
rs61977473	0.80[AMR][1000 genomes]
rs61977474	0.80[AMR][1000 genomes]
rs72733742	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70749400-70758400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:70756800-70759200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr14:70756800-70759600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr14:70756800-70760000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr14:70756800-70762000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:70757200-70759400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr14:70757200-70761400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr14:70757400-70759000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr14:70757400-70759200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:70757600-70760000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr14:70757800-70759800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr14:70758200-70761800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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