Variant report

Variant	rs11158903
Chromosome Location	chr14:71714187-71714188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1000448	0.91[ASN][1000 genomes]
rs1000449	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11622499	0.83[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11623541	0.82[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11623545	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs11627275	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17109189	0.82[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2190863	0.82[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs4899392	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4902924	0.83[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs56398258	0.88[ASN][1000 genomes]
rs7149082	0.83[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71709000-71715200	Weak transcription	Fetal Brain Male	brain
2	chr14:71709600-71717800	Weak transcription	Fetal Lung	lung
3	chr14:71711600-71714800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr14:71711600-71714800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr14:71711800-71714800	Weak transcription	Fetal Heart	heart
6	chr14:71712000-71714200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:71712000-71714200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:71712000-71714400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr14:71712200-71714200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr14:71712200-71714200	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr14:71712200-71714200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr14:71712200-71714200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr14:71712200-71714200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr14:71712200-71714400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:71713000-71715400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:71713200-71714200	Enhancers	HUVEC	blood vessel
17	chr14:71713200-71715600	Enhancers	Osteobl	bone
18	chr14:71713400-71714200	Enhancers	HMEC	breast
19	chr14:71713400-71714800	Enhancers	NHEK	skin
20	chr14:71713400-71715800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr14:71713800-71714200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr14:71713800-71714200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr14:71713800-71714400	ZNF genes & repeats	Dnd41	blood
24	chr14:71713800-71714800	Weak transcription	Stomach Mucosa	stomach
25	chr14:71714000-71714200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:71714000-71714400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:71714000-71717200	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links