Variant report

Variant	rs11159255
Chromosome Location	chr14:77810713-77810714
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77809100..77810943-chr14:77811490..77814273,2	MCF-7	breast:
2	chr14:77809184..77811405-chr14:77842213..77844596,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100580	Chromatin interaction
ENSG00000100583	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10134642	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10135535	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10143274	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10145328	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11847248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12586467	0.81[ASN][1000 genomes]
rs12586474	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12893903	0.80[ASN][1000 genomes]
rs1811281	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2160837	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2270422	0.83[CEU][hapmap];0.84[AMR][1000 genomes]
rs35549669	0.83[ASN][1000 genomes]
rs3815628	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4903575	0.89[CEU][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6636	0.89[CEU][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6637	0.89[CEU][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs731346	0.84[AMR][1000 genomes]
rs8022676	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs9323641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9323642	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv902107	chr14:77790416-77871777	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11159255	GSTZ1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77789200-77818200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr14:77793200-77824600	Weak transcription	Psoas Muscle	Psoas
3	chr14:77801200-77812600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:77801400-77811200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr14:77802000-77813000	Strong transcription	Primary B cells from peripheral blood	blood
6	chr14:77803000-77811000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:77803000-77811000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:77803600-77813000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr14:77803800-77835400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr14:77804200-77811400	Strong transcription	Primary B cells from cord blood	blood
11	chr14:77804400-77811400	Strong transcription	Primary hematopoietic stem cells	blood
12	chr14:77804600-77810800	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr14:77804600-77811000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:77804800-77811400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:77805200-77813000	Strong transcription	Fetal Intestine Large	intestine
16	chr14:77805200-77818600	Weak transcription	Small Intestine	intestine
17	chr14:77805400-77810800	Strong transcription	GM12878-XiMat	blood
18	chr14:77805400-77811000	Strong transcription	Primary T cells from cord blood	blood
19	chr14:77805400-77811200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr14:77805400-77812800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:77805600-77810800	Strong transcription	Left Ventricle	heart
22	chr14:77805600-77811000	Strong transcription	Brain Inferior Temporal Lobe	brain
23	chr14:77805600-77811000	Strong transcription	Pancreas	Pancrea
24	chr14:77805800-77810800	Strong transcription	Fetal Stomach	stomach
25	chr14:77805800-77811000	Strong transcription	Fetal Thymus	thymus
26	chr14:77805800-77811200	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr14:77805800-77813200	Strong transcription	Stomach Smooth Muscle	stomach
28	chr14:77806000-77811000	Strong transcription	Dnd41	blood
29	chr14:77806000-77811200	Strong transcription	Liver	Liver
30	chr14:77806200-77810800	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr14:77806200-77811000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr14:77806200-77811000	Strong transcription	Lung	lung
33	chr14:77806200-77811000	Strong transcription	Spleen	Spleen
34	chr14:77806200-77812000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr14:77806200-77812800	Strong transcription	Thymus	Thymus
36	chr14:77806200-77819400	Weak transcription	A549	lung
37	chr14:77806400-77810800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:77806400-77811200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr14:77806400-77838600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr14:77806600-77822200	Weak transcription	NHDF-Ad	bronchial
41	chr14:77806800-77810800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr14:77807000-77810800	Strong transcription	Brain Angular Gyrus	brain
43	chr14:77807800-77817600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr14:77807800-77819600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr14:77807800-77822000	Weak transcription	Osteobl	bone
46	chr14:77808000-77818800	Weak transcription	Placenta	Placenta
47	chr14:77808400-77812400	Weak transcription	HepG2	liver
48	chr14:77808400-77814200	Weak transcription	Esophagus	oesophagus
49	chr14:77808400-77818600	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr14:77808400-77830600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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