Variant report

Variant	rs6636
Chromosome Location	chr14:77801654-77801655
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77801139..77804066-chr14:77804282..77807434,3	K562	blood:
2	chr14:77800069..77802729-chr14:77837038..77840150,3	MCF-7	breast:
3	chr14:77800138..77802593-chr14:77840615..77842904,2	MCF-7	breast:
4	chr14:77786787..77789306-chr14:77801357..77803753,3	K562	blood:
5	chr14:77797079..77800056-chr14:77800105..77803191,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000009830	Chromatin interaction
ENSG00000100577	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10134642	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10135535	0.89[CEU][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10138030	0.91[CHB][hapmap]
rs10143274	0.81[AMR][1000 genomes]
rs10145328	0.82[AMR][1000 genomes]
rs1055592	0.82[CHB][hapmap]
rs11159255	0.89[CEU][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11547793	0.81[CHB][hapmap]
rs11847248	0.89[CEU][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12586467	0.97[ASN][1000 genomes]
rs12586474	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1811281	0.82[AMR][1000 genomes]
rs2160837	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2270422	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2287388	0.91[CHB][hapmap]
rs2287392	0.91[CHB][hapmap]
rs3759733	0.95[CHB][hapmap];0.81[EUR][1000 genomes]
rs3783986	0.95[CHB][hapmap]
rs3783989	0.81[CHB][hapmap]
rs3815628	0.85[CEU][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6637	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs731346	0.91[CHB][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9323641	0.89[CEU][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv902107	chr14:77790416-77871777	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6636	GSTZ1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77788600-77802800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:77788600-77806000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr14:77788600-77806200	Weak transcription	Thymus	Thymus
4	chr14:77788800-77804600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:77788800-77805200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:77788800-77806400	Weak transcription	Colonic Mucosa	Colon
7	chr14:77789000-77804000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:77789000-77805200	Weak transcription	Osteobl	bone
9	chr14:77789000-77805400	Weak transcription	Primary T cells from cord blood	blood
10	chr14:77789000-77805400	Weak transcription	A549	lung
11	chr14:77789000-77805600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr14:77789000-77805600	Weak transcription	Left Ventricle	heart
13	chr14:77789000-77805800	Weak transcription	Fetal Thymus	thymus
14	chr14:77789000-77806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:77789000-77806000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:77789000-77806000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:77789000-77806000	Weak transcription	Colon Smooth Muscle	Colon
18	chr14:77789000-77806200	Weak transcription	Brain Hippocampus Middle	brain
19	chr14:77789000-77806200	Weak transcription	Lung	lung
20	chr14:77789000-77806400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr14:77789000-77807600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr14:77789200-77801800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr14:77789200-77802000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr14:77789200-77802000	Weak transcription	Primary B cells from peripheral blood	blood
25	chr14:77789200-77804400	Weak transcription	Brain Anterior Caudate	brain
26	chr14:77789200-77805200	Weak transcription	Fetal Intestine Large	intestine
27	chr14:77789200-77805400	Weak transcription	GM12878-XiMat	blood
28	chr14:77789200-77805600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:77789200-77805600	Weak transcription	Fetal Brain Female	brain
30	chr14:77789200-77805600	Weak transcription	Pancreas	Pancrea
31	chr14:77789200-77805800	Weak transcription	Fetal Muscle Leg	muscle
32	chr14:77789200-77805800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr14:77789200-77805800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr14:77789200-77806200	Weak transcription	Fetal Lung	lung
35	chr14:77789200-77806400	Weak transcription	Esophagus	oesophagus
36	chr14:77789200-77806800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:77789200-77807000	Weak transcription	Brain Angular Gyrus	brain
38	chr14:77789200-77818200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr14:77789400-77805800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr14:77789400-77806200	Weak transcription	Brain Germinal Matrix	brain
41	chr14:77789600-77806200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr14:77790400-77802200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr14:77791200-77803600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr14:77791400-77802600	Weak transcription	Fetal Intestine Small	intestine
45	chr14:77791600-77807400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr14:77792400-77806400	Weak transcription	Placenta	Placenta
47	chr14:77792600-77802000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr14:77792600-77803800	Weak transcription	Fetal Stomach	stomach
49	chr14:77793200-77824600	Weak transcription	Psoas Muscle	Psoas
50	chr14:77794400-77807800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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