Variant report

Variant	rs11161825
Chromosome Location	chr1:86902586-86902587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:86898686..86902993-chr1:86903541..86907633,5	K562	blood:

Variant related genes	Relation type
ENSG00000137975	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10493791	1.00[ASN][1000 genomes]
rs11161821	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11161822	1.00[ASN][1000 genomes]
rs11161824	1.00[ASN][1000 genomes]
rs11161826	1.00[ASN][1000 genomes]
rs11161827	1.00[ASN][1000 genomes]
rs11161828	1.00[ASN][1000 genomes]
rs11161829	1.00[ASN][1000 genomes]
rs11161830	1.00[ASN][1000 genomes]
rs11161832	1.00[ASN][1000 genomes]
rs11161834	1.00[ASN][1000 genomes]
rs11161835	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11800629	1.00[ASN][1000 genomes]
rs11807082	1.00[ASN][1000 genomes]
rs12058493	1.00[ASN][1000 genomes]
rs12060112	1.00[ASN][1000 genomes]
rs12083761	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12086619	0.88[ASN][1000 genomes]
rs12087823	0.88[ASN][1000 genomes]
rs12087904	0.88[ASN][1000 genomes]
rs12091898	0.88[ASN][1000 genomes]
rs12092398	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12096694	0.88[ASN][1000 genomes]
rs12096784	0.88[ASN][1000 genomes]
rs12752909	0.88[ASN][1000 genomes]
rs1413426	0.88[ASN][1000 genomes]
rs17129150	1.00[ASN][1000 genomes]
rs17129155	1.00[ASN][1000 genomes]
rs2390059	0.88[ASN][1000 genomes]
rs2390093	0.88[ASN][1000 genomes]
rs2390094	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4291478	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs969787	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs969789	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs969790	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1002541	chr1:86689088-86905902	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86890600-86903000	Weak transcription	Esophagus	oesophagus
2	chr1:86896600-86902600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:86896600-86914400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:86897200-86922600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:86897200-86922800	Strong transcription	HMEC	breast
6	chr1:86897400-86906200	Strong transcription	NHEK	skin
7	chr1:86897400-86916000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:86902000-86913200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:86902200-86905800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:86902200-86906800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr1:86902200-86907200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:86902400-86907000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:86902400-86907400	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links