Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1013630	0.81[ASN][1000 genomes]
rs10493579	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162071	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162078	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11581154	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12135830	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12140157	1.00[YRI][hapmap]
rs12142643	1.00[YRI][hapmap]
rs1340689	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17097933	0.92[EUR][1000 genomes]
rs17098324	1.00[LWK][hapmap]
rs17599188	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17606806	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856835	0.81[ASN][1000 genomes]
rs35821217	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4381138	0.81[ASN][1000 genomes]
rs4576618	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58865154	0.83[EUR][1000 genomes]
rs61771294	0.91[EUR][1000 genomes]
rs61771304	0.86[ASN][1000 genomes]
rs6668566	0.81[ASN][1000 genomes]
rs6669349	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7536625	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2754129	chr1:76489579-76529279	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870968	chr1:76490234-76552475	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11162072	FAM73A	cis	parietal	SCAN
rs11162072	RABGGTB	cis	cerebellum	SCAN
rs11162072	LRRIQ3	cis	cerebellum	SCAN
rs11162072	SNORD45B	cis	cerebellum	SCAN
rs11162072	PIGK	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76506400-76514000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:76506600-76514000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:76507600-76513600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:76507800-76513800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:76507800-76514000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:76509800-76514000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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