Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10493579	0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes]
rs11162068	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11162071	0.93[EUR][1000 genomes]
rs11162072	0.92[EUR][1000 genomes]
rs11162078	0.89[EUR][1000 genomes]
rs11581154	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12116904	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12135830	0.89[EUR][1000 genomes]
rs17097905	0.90[AFR][1000 genomes]
rs17097917	0.90[AFR][1000 genomes]
rs17097930	0.90[AFR][1000 genomes]
rs17097991	0.94[LWK][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs17098000	0.85[AFR][1000 genomes]
rs17599188	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17606806	0.93[EUR][1000 genomes]
rs35821217	0.92[EUR][1000 genomes]
rs4576618	0.93[EUR][1000 genomes]
rs58865154	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61771294	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669349	0.94[EUR][1000 genomes]
rs72988522	0.85[AFR][1000 genomes]
rs7536625	0.89[EUR][1000 genomes]
rs7545248	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2754129	chr1:76489579-76529279	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870968	chr1:76490234-76552475	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17097933	RABGGTB	cis	cerebellum	SCAN
rs17097933	SNORD45B	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76489800-76502800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:76491000-76492200	Weak transcription	Fetal Lung	lung
3	chr1:76491800-76497400	Weak transcription	Primary T cells from cord blood	blood

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