Variant report

Variant	rs17097991
Chromosome Location	chr1:76506666-76506667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17097905	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17097917	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17097930	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17097933	0.85[AFR][1000 genomes]
rs17097987	0.85[AMR][1000 genomes]
rs17098000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5745536	1.00[MEX][hapmap]
rs59469604	0.85[AMR][1000 genomes]
rs61287523	0.85[AMR][1000 genomes]
rs61771294	0.87[AFR][1000 genomes]
rs72986699	0.85[AMR][1000 genomes]
rs72988522	1.00[AFR][1000 genomes]
rs72988538	0.85[AMR][1000 genomes]
rs74091558	0.85[AMR][1000 genomes]
rs7512384	0.85[AMR][1000 genomes]
rs7523556	0.85[AMR][1000 genomes]
rs7536525	0.85[AMR][1000 genomes]
rs7545248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2754129	chr1:76489579-76529279	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870968	chr1:76490234-76552475	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76502200-76507200	Enhancers	Fetal Intestine Large	intestine
2	chr1:76502200-76507400	Enhancers	Fetal Intestine Small	intestine
3	chr1:76503400-76507000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:76503600-76509600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:76504000-76509200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:76504200-76507400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:76505600-76507400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:76505800-76506800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:76505800-76506800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:76505800-76507000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:76505800-76507200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:76505800-76507800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr1:76506000-76506800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:76506000-76506800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr1:76506000-76506800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:76506000-76507800	Enhancers	Placenta Amnion	Placenta Amnion
17	chr1:76506200-76507400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr1:76506200-76507400	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr1:76506200-76508000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:76506400-76514000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr1:76506600-76506800	Enhancers	Fetal Stomach	stomach
22	chr1:76506600-76508000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr1:76506600-76514000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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