Variant report

Variant	rs74091558
Chromosome Location	chr1:76509946-76509947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11800149	0.89[AFR][1000 genomes]
rs17097903	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17097930	0.85[AMR][1000 genomes]
rs17097987	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17097991	0.85[AMR][1000 genomes]
rs17098000	0.85[AMR][1000 genomes]
rs56157193	0.82[AFR][1000 genomes]
rs59469604	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61287523	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72986699	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72988538	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74091550	0.83[AMR][1000 genomes]
rs7512384	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7523556	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7535776	0.81[AFR][1000 genomes]
rs7536525	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7539161	0.82[AFR][1000 genomes]
rs7545248	0.85[AMR][1000 genomes]
rs7545733	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2754129	chr1:76489579-76529279	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870968	chr1:76490234-76552475	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76506400-76514000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:76506600-76514000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:76507600-76513600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:76507800-76513800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:76507800-76514000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:76509600-76510000	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr1:76509800-76510000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:76509800-76514000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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