Variant report

Variant	rs7539161
Chromosome Location	chr1:76477680-76477681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17097903	0.86[AFR][1000 genomes]
rs17097987	1.00[YRI][hapmap]
rs17097991	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs56157193	0.83[AFR][1000 genomes]
rs5745536	1.00[MEX][hapmap]
rs72986699	0.83[AFR][1000 genomes]
rs74091558	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76474800-76478400	Weak transcription	Primary B cells from cord blood	blood
2	chr1:76475200-76478600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:76475800-76478000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:76477400-76479800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr1:76477600-76479800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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