Variant report

Variant	rs17097930
Chromosome Location	chr1:76491254-76491255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17097905	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17097917	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17097933	0.90[AFR][1000 genomes]
rs17097987	0.85[AMR][1000 genomes]
rs17097991	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17098000	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59469604	0.85[AMR][1000 genomes]
rs61287523	0.85[AMR][1000 genomes]
rs61771294	0.91[AFR][1000 genomes]
rs72986699	0.85[AMR][1000 genomes]
rs72988522	0.95[AFR][1000 genomes]
rs72988538	0.85[AMR][1000 genomes]
rs74091558	0.85[AMR][1000 genomes]
rs7512384	0.85[AMR][1000 genomes]
rs7523556	0.85[AMR][1000 genomes]
rs7536525	0.85[AMR][1000 genomes]
rs7545248	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2754129	chr1:76489579-76529279	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870968	chr1:76490234-76552475	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76488200-76491800	Enhancers	Primary T cells from cord blood	blood
2	chr1:76489800-76502800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:76491000-76492200	Weak transcription	Fetal Lung	lung
4	chr1:76491200-76491400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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