Variant report

Variant	rs11800149
Chromosome Location	chr1:76534883-76534884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76528266..76531083-chr1:76533694..76535257,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17097903	0.86[AFR][1000 genomes]
rs17097987	0.84[YRI][hapmap];0.92[AFR][1000 genomes]
rs56157193	0.84[AFR][1000 genomes]
rs56320696	0.88[AFR][1000 genomes]
rs59469604	1.00[AFR][1000 genomes]
rs61287523	0.92[AFR][1000 genomes]
rs72986699	0.89[AFR][1000 genomes]
rs72988538	1.00[AFR][1000 genomes]
rs74091558	0.89[AFR][1000 genomes]
rs7512384	0.97[AFR][1000 genomes]
rs7523556	1.00[AFR][1000 genomes]
rs7535776	0.90[AFR][1000 genomes]
rs7536525	1.00[AFR][1000 genomes]
rs7545733	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv870968	chr1:76490234-76552475	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv521786	chr1:76525783-76535434	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv871862	chr1:76525783-76598209	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76531200-76535200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:76531400-76535000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:76531400-76538600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:76531400-76539800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:76532600-76540000	Weak transcription	Aorta	Aorta
6	chr1:76533200-76535400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr1:76533800-76535200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:76533800-76535200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:76533800-76535400	Enhancers	Fetal Lung	lung
10	chr1:76533800-76535600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:76534000-76535000	Enhancers	HMEC	breast
12	chr1:76534000-76535200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:76534000-76535200	Enhancers	Adipose Nuclei	Adipose
14	chr1:76534000-76535200	Enhancers	NH-A	brain
15	chr1:76534000-76535400	Enhancers	Colon Smooth Muscle	Colon
16	chr1:76534000-76535600	Enhancers	Stomach Smooth Muscle	stomach
17	chr1:76534200-76535000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:76534200-76535000	Enhancers	Osteobl	bone
19	chr1:76534200-76535200	Enhancers	Rectal Smooth Muscle	rectum
20	chr1:76534200-76535400	Enhancers	Stomach Mucosa	stomach
21	chr1:76534200-76535600	Enhancers	Fetal Stomach	stomach
22	chr1:76534400-76535000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr1:76534400-76535000	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr1:76534400-76535200	Enhancers	Fetal Kidney	kidney
25	chr1:76534400-76535200	Enhancers	Fetal Muscle Leg	muscle
26	chr1:76534400-76535400	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr1:76534600-76535000	Enhancers	A549	lung
28	chr1:76534600-76535200	Enhancers	Brain Hippocampus Middle	brain
29	chr1:76534600-76535600	Enhancers	HUVEC	blood vessel
30	chr1:76534600-76539200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:76534600-76539400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr1:76534600-76539800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr1:76534600-76540000	Weak transcription	NHDF-Ad	bronchial
34	chr1:76534800-76538600	Weak transcription	Placenta Amnion	Placenta Amnion

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