Variant report

Variant	rs11162116
Chromosome Location	chr1:76758281-76758282
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76756888..76759692-chr1:76896597..76899350,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11162113	0.97[ASN][1000 genomes]
rs12036155	0.96[ASN][1000 genomes]
rs1414486	0.92[ASN][1000 genomes]
rs1537782	0.98[ASN][1000 genomes]
rs3862905	0.98[ASN][1000 genomes]
rs3908823	0.97[ASN][1000 genomes]
rs56831847	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76745600-76761000	Weak transcription	Aorta	Aorta
2	chr1:76749200-76760000	Enhancers	Primary T cells from cord blood	blood
3	chr1:76750200-76760200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr1:76750400-76760200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr1:76750400-76760600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr1:76750400-76762000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr1:76753600-76760200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr1:76754000-76758600	Enhancers	Primary T cells fromperipheralblood	blood
9	chr1:76754000-76761600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr1:76755800-76783000	Weak transcription	Fetal Lung	lung
11	chr1:76756000-76758800	Enhancers	Primary B cells from cord blood	blood
12	chr1:76756400-76758800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr1:76756400-76759800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:76756600-76758400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:76756600-76759200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr1:76756600-76760400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr1:76756600-76764200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr1:76756600-76764400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr1:76756800-76758400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr1:76756800-76763800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr1:76757000-76759200	Weak transcription	Brain Substantia Nigra	brain
22	chr1:76757000-76760400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr1:76757200-76758400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:76757200-76759000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr1:76757200-76759000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:76757200-76760400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr1:76757200-76764200	Weak transcription	Fetal Thymus	thymus
28	chr1:76757200-76764400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:76757400-76759000	Weak transcription	Brain Hippocampus Middle	brain
30	chr1:76757400-76759600	Weak transcription	Fetal Brain Female	brain
31	chr1:76757600-76758400	Enhancers	Fetal Kidney	kidney
32	chr1:76757600-76759200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr1:76757600-76760400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr1:76757800-76759000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr1:76758000-76758400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr1:76758200-76760400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr1:76758200-76762400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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