Variant report

Variant	rs12036155
Chromosome Location	chr1:76764654-76764655
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10218683	0.84[CEU][hapmap]
rs11162104	0.84[CEU][hapmap]
rs11162113	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11162116	0.96[ASN][1000 genomes]
rs12028135	0.84[CEU][hapmap]
rs1414486	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1537782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3862905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3908823	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56831847	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76755800-76783000	Weak transcription	Fetal Lung	lung
2	chr1:76759800-76766600	Weak transcription	Brain Substantia Nigra	brain
3	chr1:76760400-76779200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:76761000-76766200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:76761200-76768200	Enhancers	Primary T cells from cord blood	blood
6	chr1:76761400-76765200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr1:76763200-76767600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:76763800-76764800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:76763800-76764800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:76763800-76765200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:76763800-76765600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr1:76763800-76767000	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr1:76763800-76768600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr1:76764000-76765000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:76764000-76769000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr1:76764000-76769200	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr1:76764000-76769600	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr1:76764200-76764800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr1:76764200-76764800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr1:76764200-76764800	Enhancers	Fetal Thymus	thymus
21	chr1:76764200-76765000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr1:76764200-76768200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr1:76764400-76765000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:76764600-76766600	Enhancers	Primary T cells fromperipheralblood	blood
25	chr1:76764600-76767800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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