Variant report

Variant	rs12028135
Chromosome Location	chr1:76733040-76733041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10218683	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11162104	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11162113	0.89[CEU][hapmap]
rs12036155	0.84[CEU][hapmap]
rs1414486	0.84[CEU][hapmap]
rs1537782	0.84[CEU][hapmap]
rs3862905	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1499	chr1:76704981-76749688	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76723800-76734000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:76724200-76733400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:76726400-76734200	Weak transcription	Thymus	Thymus
4	chr1:76726400-76740000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:76726800-76733400	Weak transcription	Primary B cells from cord blood	blood
6	chr1:76727400-76744800	Weak transcription	Aorta	Aorta
7	chr1:76729200-76734000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:76729800-76734000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr1:76731000-76733200	Enhancers	Primary T cells from cord blood	blood
10	chr1:76731000-76734000	Weak transcription	Fetal Heart	heart
11	chr1:76731800-76733800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr1:76731800-76736200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr1:76731800-76736600	Enhancers	Fetal Thymus	thymus
14	chr1:76732000-76733400	Enhancers	Fetal Muscle Leg	muscle
15	chr1:76732000-76734000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:76732000-76737000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr1:76732000-76737600	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr1:76732200-76733200	Enhancers	HSMMtube	muscle
19	chr1:76732200-76733400	Enhancers	Primary T cells fromperipheralblood	blood
20	chr1:76732200-76736400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr1:76732200-76736400	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr1:76732200-76737000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr1:76732400-76733200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr1:76732400-76735200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:76732400-76735600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr1:76732600-76733400	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr1:76732600-76734400	Weak transcription	Adipose Nuclei	Adipose
28	chr1:76732600-76735000	Enhancers	Dnd41	blood
29	chr1:76732800-76733600	Weak transcription	Brain Hippocampus Middle	brain
30	chr1:76732800-76733800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr1:76732800-76734000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr1:76732800-76734000	Weak transcription	Right Atrium	heart
33	chr1:76732800-76735000	Enhancers	Fetal Kidney	kidney
34	chr1:76732800-76735800	Enhancers	Fetal Lung	lung
35	chr1:76732800-76736000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr1:76733000-76733200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr1:76733000-76734000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr1:76733000-76734000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr1:76733000-76734400	Weak transcription	Left Ventricle	heart
40	chr1:76733000-76734400	Weak transcription	Psoas Muscle	Psoas
41	chr1:76733000-76735400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr1:76733000-76735800	Enhancers	Primary hematopoietic stem cells	blood
43	chr1:76733000-76735800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr1:76733000-76737000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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