Variant report

Variant	rs11162307
Chromosome Location	chr1:77741794-77741795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11162306	0.86[AFR][1000 genomes]
rs11584919	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11590456	1.00[CHB][hapmap]
rs1167202	1.00[CHB][hapmap]
rs1167212	1.00[CHB][hapmap]
rs12062309	0.86[AFR][1000 genomes]
rs12065011	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs12076331	0.86[AFR][1000 genomes]
rs12077763	1.00[CHD][hapmap]
rs12119637	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120921	1.00[CHD][hapmap]
rs12124822	1.00[CHB][hapmap]
rs12125503	1.00[CHB][hapmap]
rs12126117	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128049	1.00[CHB][hapmap]
rs12130590	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132273	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12132703	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133976	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs12135530	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135843	1.00[CHB][hapmap]
rs12136415	1.00[CHB][hapmap]
rs12141929	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1377737	1.00[CHB][hapmap]
rs1453981	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17098287	1.00[CHB][hapmap]
rs17100458	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17100463	1.00[CHB][hapmap]
rs17100476	1.00[CHB][hapmap]
rs4949652	1.00[ASN][1000 genomes]
rs4949773	1.00[CHD][hapmap]
rs4949786	1.00[ASN][1000 genomes]
rs4949788	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[MEX][hapmap];0.82[EUR][1000 genomes]
rs4949794	1.00[CHB][hapmap]
rs4949801	1.00[ASN][1000 genomes]
rs72679521	1.00[ASN][1000 genomes]
rs72683952	1.00[ASN][1000 genomes]
rs7546963	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7550325	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005183	chr1:77728990-77949309	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv535010	chr1:77728990-77949309	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv932557	chr1:77730247-77958687	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77737200-77747400	Weak transcription	Aorta	Aorta
2	chr1:77738400-77746600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:77740200-77746800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:77740600-77742800	Weak transcription	NHDF-Ad	bronchial
5	chr1:77741600-77744000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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