Variant report

Variant	rs11162355
Chromosome Location	chr1:77961074-77961075
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10782651	0.86[CHB][hapmap]
rs10873944	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873945	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873947	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11162356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12093263	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12133202	0.98[ASN][1000 genomes]
rs1532508	0.84[ASN][1000 genomes]
rs17380544	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs2133203	0.91[ASN][1000 genomes]
rs2133204	0.96[ASN][1000 genomes]
rs2647503	0.86[CHB][hapmap]
rs2803152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2803155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34140909	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34855794	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6603950	0.86[CHB][hapmap]
rs6603951	0.86[ASN][1000 genomes]
rs6697255	1.00[ASN][1000 genomes]
rs7514041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514937	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7522356	0.81[CHD][hapmap]
rs7542588	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv871143	chr1:77955577-78031994	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77913200-77968400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr1:77945800-77961600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr1:77955800-77964400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:77956000-77961600	Weak transcription	NHLF	lung
5	chr1:77956000-77964600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:77956200-77961600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:77956200-77964000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:77956200-77964200	Weak transcription	NHDF-Ad	bronchial
9	chr1:77956200-77964400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:77956200-77975600	Weak transcription	HSMMtube	muscle
11	chr1:77958200-77974800	Weak transcription	Brain Angular Gyrus	brain
12	chr1:77958400-77961800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:77958400-77974600	Weak transcription	Brain Hippocampus Middle	brain
14	chr1:77958600-77965000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr1:77958800-77974600	Weak transcription	Brain Anterior Caudate	brain
16	chr1:77958800-77974600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr1:77960000-77968000	Weak transcription	HSMM	muscle
18	chr1:77960000-77974600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr1:77960000-77974600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr1:77960200-77961800	Weak transcription	Primary T cells from cord blood	blood
21	chr1:77960800-77963800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr1:77960800-77964000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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