Variant report

Variant	rs2133203
Chromosome Location	chr1:77974530-77974531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:77966991..77969632-chr1:77973867..77975954,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10873944	0.91[ASN][1000 genomes]
rs10873945	0.91[ASN][1000 genomes]
rs10873947	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11162355	0.91[ASN][1000 genomes]
rs11162356	0.91[ASN][1000 genomes]
rs11162357	0.91[ASN][1000 genomes]
rs12093263	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12133202	0.92[ASN][1000 genomes]
rs2133204	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2803152	0.92[ASN][1000 genomes]
rs2803155	0.91[ASN][1000 genomes]
rs34140909	0.88[ASN][1000 genomes]
rs34855794	0.91[ASN][1000 genomes]
rs6603951	0.86[ASN][1000 genomes]
rs6697255	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7514041	0.91[ASN][1000 genomes]
rs7514937	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv871143	chr1:77955577-78031994	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77956200-77975600	Weak transcription	HSMMtube	muscle
2	chr1:77958200-77974800	Weak transcription	Brain Angular Gyrus	brain
3	chr1:77958400-77974600	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:77958800-77974600	Weak transcription	Brain Anterior Caudate	brain
5	chr1:77958800-77974600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:77960000-77974600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:77960000-77974600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:77964000-77974600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:77965400-77974600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:77965400-77974600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:77969600-77981600	Enhancers	HUVEC	blood vessel
12	chr1:77971000-77974800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:77971000-77980400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr1:77971200-77974600	Weak transcription	Osteobl	bone
15	chr1:77971200-77978800	Weak transcription	Primary T cells from cord blood	blood
16	chr1:77971200-77980600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr1:77972800-77979200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr1:77973000-77977200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:77973200-77974600	Weak transcription	HSMM	muscle
20	chr1:77973200-77975800	Weak transcription	A549	lung
21	chr1:77973600-77983400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr1:77973800-77974600	Weak transcription	NHDF-Ad	bronchial
23	chr1:77974000-77976000	Enhancers	Brain Substantia Nigra	brain
24	chr1:77974000-77976000	Enhancers	Fetal Muscle Leg	muscle
25	chr1:77974200-77976000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:77974200-77977400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr1:77974400-77978200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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