Variant report

Variant	rs11162406
Chromosome Location	chr1:78488816-78488817
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:78487924..78490767-chr1:78494264..78496210,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10437022	0.84[AMR][1000 genomes]
rs10873960	0.84[AMR][1000 genomes]
rs10873963	0.83[AMR][1000 genomes]
rs11162403	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1166701	0.81[AMR][1000 genomes]
rs1166702	0.81[AMR][1000 genomes]
rs1166704	0.80[AMR][1000 genomes]
rs11805735	0.81[AMR][1000 genomes]
rs11807240	0.81[AMR][1000 genomes]
rs12036318	0.91[ASN][1000 genomes]
rs12405212	0.81[AMR][1000 genomes]
rs12409561	0.81[AMR][1000 genomes]
rs1335481	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1536160	0.81[AMR][1000 genomes]
rs1616949	0.81[AMR][1000 genomes]
rs1970210	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1971368	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2136682	0.83[AMR][1000 genomes]
rs3767028	0.81[AMR][1000 genomes]
rs4370803	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4372306	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4631748	0.83[AMR][1000 genomes]
rs4949828	0.81[AMR][1000 genomes]
rs4949829	0.81[AMR][1000 genomes]
rs57421725	0.81[AMR][1000 genomes]
rs6424640	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6424650	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6424660	0.87[AMR][1000 genomes]
rs6656888	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6686230	0.92[AMR][1000 genomes]
rs750720	0.81[AMR][1000 genomes]
rs7538210	0.84[AMR][1000 genomes]
rs9659938	0.81[AMR][1000 genomes]
rs9730688	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794082	chr1:78102426-78492221	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
2	esv3434340	chr1:78153780-78607103	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
3	nsv1013008	chr1:78463173-78958701	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
4	nsv535012	chr1:78463173-78958701	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
5	esv1801396	chr1:78468094-78492221	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78475200-78495600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:78475800-78491400	Weak transcription	Ovary	ovary
3	chr1:78477400-78494000	Weak transcription	Aorta	Aorta
4	chr1:78479400-78493800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr1:78481000-78490800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:78481000-78492000	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:78482200-78489000	Weak transcription	Fetal Lung	lung
8	chr1:78482400-78498800	Weak transcription	K562	blood
9	chr1:78484000-78494600	Weak transcription	HUVEC	blood vessel
10	chr1:78485000-78490800	Weak transcription	Right Ventricle	heart
11	chr1:78485000-78504000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:78485200-78491400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr1:78485400-78504200	Weak transcription	NH-A	brain
14	chr1:78485600-78491800	Weak transcription	HSMMtube	muscle
15	chr1:78486400-78509400	Weak transcription	HSMM	muscle

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