The 2.0 version of rSNPBase

Variant report

Variant rs9730688
Chromosome Location chr1:78478362-78478363
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:78448800-78488200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:78452800-78478800 Weak transcription Spleen Spleen
3 chr1:78454200-78485600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr1:78470800-78487800 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr1:78471000-78487400 Weak transcription Lung lung
6 chr1:78471200-78486400 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr1:78471600-78483000 Weak transcription Placenta Amnion Placenta Amnion
8 chr1:78471600-78483400 Weak transcription iPS-18 Cell Line embryonic stem cell
9 chr1:78471600-78483800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr1:78471600-78487000 Weak transcription Primary B cells from peripheral blood blood
11 chr1:78471800-78482000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
12 chr1:78472000-78478800 Weak transcription Monocytes-CD14+_RO01746 blood
13 chr1:78472000-78479200 Weak transcription Fetal Brain Male brain
14 chr1:78472000-78484800 Weak transcription Colonic Mucosa Colon
15 chr1:78472000-78487000 Weak transcription Primary monocytes fromperipheralblood blood
16 chr1:78472200-78484200 Weak transcription HUES64 Cell Line embryonic stem cell
17 chr1:78472400-78483200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
18 chr1:78472400-78486800 Weak transcription Fetal Thymus thymus
19 chr1:78472600-78478600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr1:78472600-78478800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr1:78472600-78479800 Weak transcription Fetal Stomach stomach
22 chr1:78472800-78478600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr1:78472800-78478600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
24 chr1:78472800-78478800 Weak transcription Placenta Placenta
25 chr1:78472800-78481600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr1:78472800-78482000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr1:78472800-78486400 Weak transcription Primary hematopoietic stem cells blood
28 chr1:78473800-78480200 Weak transcription Primary T cells fromperipheralblood blood
29 chr1:78473800-78487000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
30 chr1:78474000-78478600 Weak transcription Fetal Muscle Trunk muscle
31 chr1:78474000-78480600 Weak transcription Rectal Mucosa Donor 31 rectum
32 chr1:78474000-78483200 Weak transcription Primary T regulatory cells fromperipheralblood blood
33 chr1:78474000-78486800 Weak transcription Primary T helper naive cells fromperipheralblood blood
34 chr1:78474000-78486800 Weak transcription Pancreas Pancrea
35 chr1:78474200-78478600 Weak transcription Duodenum Mucosa Duodenum
36 chr1:78474200-78478800 Weak transcription Rectal Mucosa Donor 29 rectum
37 chr1:78474200-78480000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr1:78474200-78480600 Weak transcription Fetal Lung lung
39 chr1:78474200-78482600 Weak transcription NHEK skin
40 chr1:78474200-78483600 Weak transcription HMEC breast
41 chr1:78474200-78484800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr1:78474200-78486000 Weak transcription Brain Inferior Temporal Lobe brain
43 chr1:78474200-78486600 Weak transcription Primary B cells from cord blood blood
44 chr1:78474200-78486800 Weak transcription Primary T killer naive cells fromperipheralblood blood
45 chr1:78474400-78478600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr1:78474400-78478600 Weak transcription Primary hematopoietic stem cells short term culture blood
47 chr1:78474400-78478800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr1:78474400-78480000 Weak transcription Primary T helper naive cells from peripheral blood blood
49 chr1:78474400-78486400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr1:78475200-78484000 Weak transcription Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015