Variant report
| Variant | rs11162542 |
|---|---|
| Chromosome Location | chr1:79173959-79173960 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10493615 | 0.84[ASN][1000 genomes] |
| rs11162539 | 0.84[ASN][1000 genomes] |
| rs11162540 | 0.84[ASN][1000 genomes] |
| rs11162541 | 0.82[ASN][1000 genomes] |
| rs11162544 | 0.84[ASN][1000 genomes] |
| rs11587990 | 0.82[ASN][1000 genomes] |
| rs12403117 | 0.84[ASN][1000 genomes] |
| rs12409331 | 0.84[ASN][1000 genomes] |
| rs12409781 | 0.84[ASN][1000 genomes] |
| rs17395034 | 0.84[ASN][1000 genomes] |
| rs17395097 | 0.84[ASN][1000 genomes] |
| rs17399158 | 0.84[ASN][1000 genomes] |
| rs17399192 | 0.84[ASN][1000 genomes] |
| rs1780748 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1887286 | 0.84[ASN][1000 genomes] |
| rs1926897 | 0.83[ASN][1000 genomes] |
| rs1926898 | 0.83[ASN][1000 genomes] |
| rs1926901 | 0.81[ASN][1000 genomes] |
| rs1926902 | 0.84[ASN][1000 genomes] |
| rs1926903 | 0.84[ASN][1000 genomes] |
| rs1926904 | 0.84[ASN][1000 genomes] |
| rs1926905 | 0.84[ASN][1000 genomes] |
| rs273250 | 0.84[JPT][hapmap] |
| rs58150654 | 0.84[ASN][1000 genomes] |
| rs58921479 | 0.84[ASN][1000 genomes] |
| rs58945140 | 0.84[ASN][1000 genomes] |
| rs58993850 | 0.84[ASN][1000 genomes] |
| rs60311076 | 0.84[ASN][1000 genomes] |
| rs61613596 | 0.84[ASN][1000 genomes] |
| rs61681700 | 0.84[ASN][1000 genomes] |
| rs61770023 | 0.84[ASN][1000 genomes] |
| rs61770024 | 0.84[ASN][1000 genomes] |
| rs6424785 | 0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6424786 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv871835 | chr1:78528803-79501129 | Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv830315 | chr1:79008443-79200591 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv491784 | chr1:79146141-79853482 | Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv871588 | chr1:79164901-79214489 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv3451595 | chr1:79172264-79174212 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:79171600-79176000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
