Variant report

Variant	rs11164011
Chromosome Location	chr1:85045257-85045258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11164002	0.87[AFR][1000 genomes]
rs11164012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11164013	0.87[AFR][1000 genomes]
rs12058889	0.95[AFR][1000 genomes]
rs12058978	0.95[AFR][1000 genomes]
rs12096153	0.83[AFR][1000 genomes]
rs72950374	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000325	chr1:85032605-85100748	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85040000-85049400	Weak transcription	Spleen	Spleen
2	chr1:85040600-85048400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:85040800-85046600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:85040800-85048200	Weak transcription	Primary B cells from cord blood	blood
5	chr1:85040800-85048600	Weak transcription	Gastric	stomach
6	chr1:85040800-85049200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:85041000-85048600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:85041000-85048800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:85041000-85051600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:85041200-85046400	Weak transcription	K562	blood
11	chr1:85041200-85047400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:85041200-85049400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr1:85041400-85049200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:85042800-85048600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr1:85043000-85050800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:85044200-85050800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr1:85045200-85048800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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