The 2.0 version of rSNPBase

Variant report

Variant rs11164002
Chromosome Location chr1:85005771-85005772
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84975200-85019600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr1:84975800-85030200 Weak transcription Fetal Intestine Small intestine
3 chr1:84981600-85012200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
4 chr1:84982400-85026800 Weak transcription Primary hematopoietic stem cells blood
5 chr1:84988200-85020600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
6 chr1:84991000-85034200 Weak transcription Esophagus oesophagus
7 chr1:84991000-85038200 Weak transcription Thymus Thymus
8 chr1:84991800-85026800 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr1:84992200-85026000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
10 chr1:84992400-85019400 Weak transcription Primary T helper cells fromperipheralblood blood
11 chr1:84992400-85038800 Weak transcription Skeletal Muscle Female skeletal muscle
12 chr1:84992600-85021200 Weak transcription NHDF-Ad bronchial
13 chr1:84993200-85025000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr1:84993400-85025800 Weak transcription Primary T cells fromperipheralblood blood
15 chr1:84993400-85027000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
16 chr1:84993600-85026800 Weak transcription HSMM muscle
17 chr1:84994000-85026600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr1:84994600-85008000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
19 chr1:84994800-85008600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr1:84995000-85028600 Weak transcription Fetal Intestine Large intestine
21 chr1:84995400-85020600 Weak transcription Primary T helper cells PMA-I stimulated --
22 chr1:84998600-85038800 Weak transcription Right Ventricle heart
23 chr1:84999800-85008800 Weak transcription HUVEC blood vessel
24 chr1:85000800-85027400 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr1:85001400-85036400 Weak transcription NH-A brain
26 chr1:85001600-85033600 Weak transcription NHLF lung
27 chr1:85001800-85021400 Weak transcription Primary B cells from peripheral blood blood
28 chr1:85001800-85026600 Weak transcription Primary hematopoietic stem cells short term culture blood
29 chr1:85001800-85028600 Weak transcription Fetal Thymus thymus
30 chr1:85002000-85038400 Weak transcription Aorta Aorta
31 chr1:85002200-85006600 Weak transcription Rectal Smooth Muscle rectum
32 chr1:85002200-85027600 Weak transcription Primary T regulatory cells fromperipheralblood blood
33 chr1:85002200-85034200 Weak transcription Lung lung
34 chr1:85002800-85010000 Strong transcription Monocytes-CD14+_RO01746 blood
35 chr1:85003000-85027800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
36 chr1:85003800-85026000 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr1:85003800-85033600 Weak transcription Left Ventricle heart
38 chr1:85004000-85036400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr1:85004200-85018000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr1:85004400-85006600 Enhancers Pancreatic Islets Pancreatic Islet
41 chr1:85004600-85006200 Weak transcription Primary neutrophils fromperipheralblood blood
42 chr1:85004600-85008000 Weak transcription Primary B cells from cord blood blood
43 chr1:85005000-85008200 Weak transcription Primary T cells from cord blood blood
44 chr1:85005000-85019800 Weak transcription Breast Myoepithelial Primary Cells Breast
45 chr1:85005000-85020400 Weak transcription GM12878-XiMat blood
46 chr1:85005200-85007000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr1:85005200-85013000 Weak transcription Liver Liver
48 chr1:85005200-85035000 Weak transcription Pancreas Pancrea
49 chr1:85005400-85006800 Enhancers Muscle Satellite Cultured Cells --
50 chr1:85005400-85008000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015