The 2.0 version of rSNPBase

Variant report

Variant rs12068340
Chromosome Location chr1:85019280-85019281
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84975200-85019600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr1:84975800-85030200 Weak transcription Fetal Intestine Small intestine
3 chr1:84982400-85026800 Weak transcription Primary hematopoietic stem cells blood
4 chr1:84988200-85020600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
5 chr1:84991000-85034200 Weak transcription Esophagus oesophagus
6 chr1:84991000-85038200 Weak transcription Thymus Thymus
7 chr1:84991800-85026800 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr1:84992200-85026000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr1:84992400-85019400 Weak transcription Primary T helper cells fromperipheralblood blood
10 chr1:84992400-85038800 Weak transcription Skeletal Muscle Female skeletal muscle
11 chr1:84992600-85021200 Weak transcription NHDF-Ad bronchial
12 chr1:84993200-85025000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr1:84993400-85025800 Weak transcription Primary T cells fromperipheralblood blood
14 chr1:84993400-85027000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
15 chr1:84993600-85026800 Weak transcription HSMM muscle
16 chr1:84994000-85026600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr1:84995000-85028600 Weak transcription Fetal Intestine Large intestine
18 chr1:84995400-85020600 Weak transcription Primary T helper cells PMA-I stimulated --
19 chr1:84998600-85038800 Weak transcription Right Ventricle heart
20 chr1:85000800-85027400 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr1:85001400-85036400 Weak transcription NH-A brain
22 chr1:85001600-85033600 Weak transcription NHLF lung
23 chr1:85001800-85021400 Weak transcription Primary B cells from peripheral blood blood
24 chr1:85001800-85026600 Weak transcription Primary hematopoietic stem cells short term culture blood
25 chr1:85001800-85028600 Weak transcription Fetal Thymus thymus
26 chr1:85002000-85038400 Weak transcription Aorta Aorta
27 chr1:85002200-85027600 Weak transcription Primary T regulatory cells fromperipheralblood blood
28 chr1:85002200-85034200 Weak transcription Lung lung
29 chr1:85003000-85027800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
30 chr1:85003800-85026000 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr1:85003800-85033600 Weak transcription Left Ventricle heart
32 chr1:85004000-85036400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
33 chr1:85005000-85019800 Weak transcription Breast Myoepithelial Primary Cells Breast
34 chr1:85005000-85020400 Weak transcription GM12878-XiMat blood
35 chr1:85005200-85035000 Weak transcription Pancreas Pancrea
36 chr1:85006200-85019400 Weak transcription Duodenum Mucosa Duodenum
37 chr1:85006200-85027800 Weak transcription Primary T helper naive cells fromperipheralblood blood
38 chr1:85006200-85034600 Weak transcription Ovary ovary
39 chr1:85006200-85034800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr1:85006400-85034400 Weak transcription Colon Smooth Muscle Colon
41 chr1:85006600-85038600 Weak transcription Stomach Smooth Muscle stomach
42 chr1:85006800-85027000 Weak transcription Muscle Satellite Cultured Cells --
43 chr1:85007000-85024600 Weak transcription Osteobl bone
44 chr1:85007000-85024800 Weak transcription Fetal Adrenal Gland Adrenal Gland
45 chr1:85007200-85027200 Weak transcription Fetal Lung lung
46 chr1:85007200-85038600 Weak transcription Rectal Smooth Muscle rectum
47 chr1:85007400-85027800 Weak transcription Primary T killer memory cells from peripheral blood blood
48 chr1:85007600-85026400 Weak transcription Rectal Mucosa Donor 29 rectum
49 chr1:85008600-85024400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
50 chr1:85008800-85039000 Weak transcription Fetal Brain Male brain

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Last update: Aug 31, 2015