The 2.0 version of rSNPBase

Variant report

Variant rs7544392
Chromosome Location chr1:85112079-85112080
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85087000-85147400 Weak transcription Gastric stomach
2 chr1:85099000-85115600 Weak transcription Cortex derived primary cultured neurospheres brain
3 chr1:85099000-85123400 Weak transcription H9 Cell Line embryonic stem cell
4 chr1:85099200-85115000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
5 chr1:85099200-85121400 Weak transcription NHDF-Ad bronchial
6 chr1:85099200-85138200 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr1:85099400-85115000 Weak transcription Osteobl bone
8 chr1:85099400-85131200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr1:85099600-85122600 Weak transcription Fetal Brain Male brain
10 chr1:85100600-85112400 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr1:85100600-85116800 Weak transcription Rectal Mucosa Donor 29 rectum
12 chr1:85101000-85123200 Weak transcription Fetal Kidney kidney
13 chr1:85101000-85124400 Weak transcription Hela-S3 cervix
14 chr1:85101600-85121000 Weak transcription Placenta Placenta
15 chr1:85103000-85115000 Weak transcription HMEC breast
16 chr1:85104600-85116000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr1:85105000-85119000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
18 chr1:85105800-85115000 Weak transcription Small Intestine intestine
19 chr1:85106000-85116600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr1:85106200-85112400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr1:85106200-85115000 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr1:85106200-85140400 Weak transcription NHEK skin
23 chr1:85106400-85114800 Weak transcription Fetal Brain Female brain
24 chr1:85106400-85155400 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr1:85106600-85114800 Weak transcription Duodenum Mucosa Duodenum
26 chr1:85106600-85116800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr1:85107600-85114800 Weak transcription Primary B cells from cord blood blood
28 chr1:85107600-85115000 Weak transcription Primary T cells from cord blood blood
29 chr1:85107800-85115400 Weak transcription Brain Cingulate Gyrus brain
30 chr1:85108000-85123200 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr1:85108000-85155000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
32 chr1:85108200-85112600 Weak transcription iPS-20b Cell Line embryonic stem cell
33 chr1:85108200-85115000 Weak transcription Stomach Smooth Muscle stomach
34 chr1:85108200-85119000 Weak transcription Right Ventricle heart
35 chr1:85108200-85123400 Weak transcription Esophagus oesophagus
36 chr1:85108200-85128800 Weak transcription GM12878-XiMat blood
37 chr1:85108400-85115000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
38 chr1:85108400-85115200 Weak transcription Brain Anterior Caudate brain
39 chr1:85108400-85121400 Weak transcription Left Ventricle heart
40 chr1:85108400-85121600 Weak transcription Brain Germinal Matrix brain
41 chr1:85108600-85113400 Weak transcription Primary hematopoietic stem cells short term culture blood
42 chr1:85108600-85114800 Weak transcription Brain Substantia Nigra brain
43 chr1:85108600-85116000 Weak transcription H1 Cell Line embryonic stem cell
44 chr1:85108800-85113000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr1:85108800-85114800 Weak transcription Colon Smooth Muscle Colon
46 chr1:85108800-85114800 Weak transcription Dnd41 blood
47 chr1:85109000-85116400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr1:85109000-85121200 Weak transcription HSMMtube muscle
49 chr1:85109200-85114800 Weak transcription Fetal Muscle Leg muscle
50 chr1:85109200-85133000 Weak transcription Pancreas Pancrea

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Last update: Aug 31, 2015