Variant report

Variant	rs12091312
Chromosome Location	chr1:85181363-85181364
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85155315..85160651-chr1:85179679..85182911,5	K562	blood:

Variant related genes	Relation type
ENSG00000117155	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11163998	1.00[EUR][1000 genomes]
rs11164002	1.00[EUR][1000 genomes]
rs11164013	1.00[EUR][1000 genomes]
rs11164022	1.00[EUR][1000 genomes]
rs11164024	1.00[EUR][1000 genomes]
rs11164025	1.00[EUR][1000 genomes]
rs11807815	1.00[EUR][1000 genomes]
rs12058889	1.00[EUR][1000 genomes]
rs12058978	1.00[EUR][1000 genomes]
rs12059657	1.00[EUR][1000 genomes]
rs12062111	0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12068340	1.00[EUR][1000 genomes]
rs12070049	1.00[EUR][1000 genomes]
rs12075688	1.00[EUR][1000 genomes]
rs12076236	1.00[EUR][1000 genomes]
rs12077315	1.00[EUR][1000 genomes]
rs12080425	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12084716	1.00[EUR][1000 genomes]
rs12092806	0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12093770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095492	1.00[EUR][1000 genomes]
rs12095537	1.00[EUR][1000 genomes]
rs12096153	1.00[EUR][1000 genomes]
rs1591972	1.00[EUR][1000 genomes]
rs1803276	1.00[EUR][1000 genomes]
rs28667025	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28706082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2945131	1.00[EUR][1000 genomes]
rs2945132	1.00[EUR][1000 genomes]
rs2994926	1.00[EUR][1000 genomes]
rs2994927	1.00[EUR][1000 genomes]
rs59323332	1.00[AMR][1000 genomes]
rs60192023	1.00[AMR][1000 genomes]
rs6665333	0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6669324	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72950312	1.00[EUR][1000 genomes]
rs74096103	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098430	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098433	1.00[AMR][1000 genomes]
rs74098441	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098442	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098443	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098453	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098454	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7517977	0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7532040	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7544392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9661833	1.00[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85171600-85184400	Weak transcription	Fetal Kidney	kidney
2	chr1:85175000-85184200	Weak transcription	Fetal Intestine Large	intestine
3	chr1:85176000-85181400	Weak transcription	Fetal Intestine Small	intestine
4	chr1:85177000-85183200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:85177200-85181800	Enhancers	Fetal Brain Male	brain
6	chr1:85178000-85185200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:85178600-85185000	Weak transcription	NH-A	brain
8	chr1:85178800-85184600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:85178800-85184800	Weak transcription	NHLF	lung
10	chr1:85178800-85185600	Weak transcription	Osteobl	bone
11	chr1:85179600-85182200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:85179600-85182200	Enhancers	Fetal Brain Female	brain
13	chr1:85179600-85185000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr1:85180000-85181600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:85180000-85182200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:85180200-85184800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr1:85180400-85181800	Enhancers	Fetal Thymus	thymus
18	chr1:85180400-85182000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr1:85180400-85182000	Enhancers	Stomach Smooth Muscle	stomach
20	chr1:85180800-85181600	Enhancers	Colon Smooth Muscle	Colon
21	chr1:85181000-85182000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr1:85181200-85181600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr1:85181200-85181600	Enhancers	H1 Cell Line	embryonic stem cell
24	chr1:85181200-85181600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:85181200-85181600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr1:85181200-85181600	Enhancers	Brain Angular Gyrus	brain
27	chr1:85181200-85181800	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr1:85181200-85181800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:85181200-85181800	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr1:85181200-85181800	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr1:85181200-85181800	Enhancers	Stomach Mucosa	stomach
32	chr1:85181200-85181800	Enhancers	K562	blood
33	chr1:85181200-85182000	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr1:85181200-85182200	Enhancers	Rectal Smooth Muscle	rectum

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