Variant report

Variant	rs12092806
Chromosome Location	chr1:85189351-85189352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:78544669..78546952-chr1:85187355..85190224,2	K562	blood:
2	chr1:85134044..85134835-chr1:85189172..85189797,2	K562	blood:
3	chr1:85154995..85157409-chr1:85188243..85190104,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117155	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11163998	1.00[EUR][1000 genomes]
rs11164002	1.00[EUR][1000 genomes]
rs11164013	1.00[EUR][1000 genomes]
rs11164022	1.00[EUR][1000 genomes]
rs11164024	1.00[EUR][1000 genomes]
rs11164025	1.00[EUR][1000 genomes]
rs11807815	1.00[EUR][1000 genomes]
rs12058889	1.00[EUR][1000 genomes]
rs12058978	1.00[EUR][1000 genomes]
rs12059657	1.00[EUR][1000 genomes]
rs12062111	0.88[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs12068340	1.00[EUR][1000 genomes]
rs12070049	1.00[EUR][1000 genomes]
rs12075688	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12076236	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12077315	1.00[EUR][1000 genomes]
rs12080425	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12084716	1.00[EUR][1000 genomes]
rs12091312	0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12093770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095492	1.00[EUR][1000 genomes]
rs12095537	1.00[EUR][1000 genomes]
rs12096153	1.00[EUR][1000 genomes]
rs1591972	1.00[EUR][1000 genomes]
rs1803276	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28667025	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28706082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2945131	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2945132	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2994926	1.00[EUR][1000 genomes]
rs2994927	1.00[EUR][1000 genomes]
rs59323332	1.00[AMR][1000 genomes]
rs60192023	1.00[AMR][1000 genomes]
rs6665333	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6669324	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72950312	1.00[EUR][1000 genomes]
rs74096103	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098433	1.00[AMR][1000 genomes]
rs74098441	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098442	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098443	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098453	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098454	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7517977	0.88[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs7532040	0.87[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7544392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9661833	1.00[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85181800-85190200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:85182000-85189600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr1:85184200-85190000	Enhancers	Fetal Intestine Large	intestine
4	chr1:85185800-85189800	Enhancers	NHDF-Ad	bronchial
5	chr1:85186200-85189800	Enhancers	Rectal Smooth Muscle	rectum
6	chr1:85186400-85189400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr1:85186600-85190600	Enhancers	HepG2	liver
8	chr1:85187200-85192000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:85187400-85191600	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:85187400-85191800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:85187400-85192000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:85187400-85192000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:85187400-85192000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:85187400-85192000	Weak transcription	NHEK	skin
15	chr1:85187400-85192400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:85187400-85192600	Weak transcription	Fetal Lung	lung
17	chr1:85187400-85193000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:85187600-85191800	Weak transcription	NHLF	lung
19	chr1:85187600-85192400	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:85187600-85192800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr1:85188200-85189400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:85188600-85191200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr1:85188800-85189400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:85188800-85190000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:85189000-85189400	Weak transcription	Liver	Liver
26	chr1:85189000-85189400	Weak transcription	K562	blood
27	chr1:85189000-85189600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:85189000-85189600	Weak transcription	Fetal Intestine Small	intestine
29	chr1:85189000-85189600	Enhancers	Osteobl	bone
30	chr1:85189000-85189800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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