Variant report

Variant	rs12077315
Chromosome Location	chr1:85035856-85035857
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:85033825..85035975-chr1:85037159..85040197,3	MCF-7	breast:
2	chr1:84966614..84978118-chr1:85034515..85041986,38	K562	blood:
3	chr1:84963151..84965022-chr1:85033614..85036547,2	K562	blood:
4	chr1:85034081..85036435-chr1:85045060..85046593,2	MCF-7	breast:
5	chr1:85035225..85038066-chr1:85038637..85040329,3	MCF-7	breast:
6	chr1:85015983..85018736-chr1:85033497..85036194,2	K562	blood:
7	chr1:84953201..84955322-chr1:85035250..85039258,3	K562	blood:
8	chr1:84944619..84946416-chr1:85035173..85036717,2	K562	blood:
9	chr1:85035171..85039138-chr1:85044940..85048929,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000117133	Chromatin interaction
ENSG00000174021	Chromatin interaction
ENSG00000122432	Chromatin interaction
ENSG00000117151	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11163998	1.00[EUR][1000 genomes]
rs11164002	1.00[EUR][1000 genomes]
rs11164013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11164022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11164024	1.00[EUR][1000 genomes]
rs11164025	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11807815	1.00[EUR][1000 genomes]
rs12058889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12058978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12068340	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12070049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12075688	1.00[EUR][1000 genomes]
rs12076236	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12080425	1.00[EUR][1000 genomes]
rs12084716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12091312	1.00[EUR][1000 genomes]
rs12092806	1.00[EUR][1000 genomes]
rs12093770	1.00[EUR][1000 genomes]
rs12095492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12096153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12097619	1.00[EUR][1000 genomes]
rs12354056	1.00[AMR][1000 genomes]
rs1591972	1.00[EUR][1000 genomes]
rs1803276	1.00[EUR][1000 genomes]
rs28667025	1.00[EUR][1000 genomes]
rs28706082	1.00[EUR][1000 genomes]
rs2945131	1.00[EUR][1000 genomes]
rs2945132	1.00[EUR][1000 genomes]
rs2994926	1.00[EUR][1000 genomes]
rs2994927	1.00[EUR][1000 genomes]
rs6665333	1.00[EUR][1000 genomes]
rs6669324	1.00[EUR][1000 genomes]
rs72950312	1.00[EUR][1000 genomes]
rs74096103	1.00[EUR][1000 genomes]
rs74098423	1.00[EUR][1000 genomes]
rs74098426	1.00[EUR][1000 genomes]
rs74098430	1.00[EUR][1000 genomes]
rs74098441	1.00[EUR][1000 genomes]
rs74098442	1.00[EUR][1000 genomes]
rs74098443	1.00[EUR][1000 genomes]
rs74098453	1.00[EUR][1000 genomes]
rs74098454	1.00[EUR][1000 genomes]
rs7532040	1.00[EUR][1000 genomes]
rs7544392	1.00[EUR][1000 genomes]
rs9661833	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000325	chr1:85032605-85100748	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84991000-85038200	Weak transcription	Thymus	Thymus
2	chr1:84992400-85038800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr1:84998600-85038800	Weak transcription	Right Ventricle	heart
4	chr1:85001400-85036400	Weak transcription	NH-A	brain
5	chr1:85002000-85038400	Weak transcription	Aorta	Aorta
6	chr1:85004000-85036400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:85006600-85038600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr1:85007200-85038600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr1:85008800-85039000	Weak transcription	Fetal Brain Male	brain
10	chr1:85009400-85037000	Weak transcription	HUVEC	blood vessel
11	chr1:85014800-85039600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:85016600-85036400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr1:85017400-85036400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr1:85017400-85039600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:85019200-85038400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr1:85022000-85038800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr1:85023400-85036400	Strong transcription	Liver	Liver
18	chr1:85024000-85036200	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr1:85024600-85036400	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr1:85024800-85038800	Weak transcription	Brain Angular Gyrus	brain
21	chr1:85025000-85036400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr1:85025400-85037000	Weak transcription	Small Intestine	intestine
23	chr1:85025600-85038800	Weak transcription	HSMMtube	muscle
24	chr1:85025800-85038800	Weak transcription	Brain Substantia Nigra	brain
25	chr1:85025800-85038800	Weak transcription	Fetal Heart	heart
26	chr1:85026200-85038800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr1:85026800-85036200	Strong transcription	Primary hematopoietic stem cells	blood
28	chr1:85027200-85037000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr1:85027200-85038600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr1:85027400-85036000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr1:85027400-85037600	Weak transcription	HepG2	liver
32	chr1:85027800-85038600	Weak transcription	Fetal Kidney	kidney
33	chr1:85028000-85038600	Weak transcription	Fetal Lung	lung
34	chr1:85028200-85037000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr1:85028200-85038800	Weak transcription	Brain Hippocampus Middle	brain
36	chr1:85028200-85038800	Weak transcription	HSMM	muscle
37	chr1:85028400-85036400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr1:85028800-85036200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr1:85028800-85039600	Weak transcription	Gastric	stomach
40	chr1:85029000-85037400	Weak transcription	Dnd41	blood
41	chr1:85029000-85038800	Weak transcription	A549	lung
42	chr1:85029200-85038600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr1:85029400-85036600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr1:85029600-85036400	Weak transcription	HMEC	breast
45	chr1:85029600-85038600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr1:85030800-85038800	Weak transcription	Fetal Stomach	stomach
47	chr1:85031000-85036200	Weak transcription	NHEK	skin
48	chr1:85031000-85037400	Weak transcription	Fetal Intestine Small	intestine
49	chr1:85031000-85038200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr1:85031200-85038600	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links