Variant report

Variant	rs11164022
Chromosome Location	chr1:85084365-85084366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:85081832..85084633-chr1:85159803..85161490,2	K562	blood:
2	chr1:85083999..85086788-chr1:85190313..85192578,2	K562	blood:
3	chr1:85038472..85040331-chr1:85083677..85087781,3	K562	blood:
4	chr1:84999607..85002399-chr1:85083617..85085507,3	K562	blood:
5	chr1:84970609..84972253-chr1:85083424..85086384,2	K562	blood:
6	chr1:85039864..85042098-chr1:85083830..85086770,2	MCF-7	breast:
7	chr1:85078939..85082218-chr1:85082659..85086975,4	K562	blood:
8	chr1:84969683..84973064-chr1:85084003..85088136,5	K562	blood:
9	chr1:85083746..85086523-chr1:85204168..85206276,2	K562	blood:
10	chr1:85038036..85041091-chr1:85083677..85086665,3	K562	blood:
11	chr1:85083903..85087925-chr1:85089048..85091034,3	K562	blood:
12	chr1:84961886..84966476-chr1:85082859..85087991,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000117151	Chromatin interaction
ENSG00000122432	Chromatin interaction
ENSG00000174021	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11163998	1.00[EUR][1000 genomes]
rs11164002	1.00[EUR][1000 genomes]
rs11164013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11164024	1.00[EUR][1000 genomes]
rs11164025	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11807815	1.00[EUR][1000 genomes]
rs12058889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12058978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12059657	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12068340	1.00[EUR][1000 genomes]
rs12070049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12075688	1.00[EUR][1000 genomes]
rs12076236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12077315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12080425	1.00[EUR][1000 genomes]
rs12084716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12091312	1.00[EUR][1000 genomes]
rs12092806	1.00[EUR][1000 genomes]
rs12093770	1.00[EUR][1000 genomes]
rs12095492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12096153	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12097619	1.00[EUR][1000 genomes]
rs12354056	1.00[AMR][1000 genomes]
rs1591972	1.00[EUR][1000 genomes]
rs1803276	1.00[EUR][1000 genomes]
rs28667025	1.00[EUR][1000 genomes]
rs28706082	1.00[EUR][1000 genomes]
rs2945131	1.00[EUR][1000 genomes]
rs2945132	1.00[EUR][1000 genomes]
rs2994926	1.00[EUR][1000 genomes]
rs2994927	1.00[EUR][1000 genomes]
rs6665333	1.00[EUR][1000 genomes]
rs6669324	1.00[EUR][1000 genomes]
rs72950312	1.00[EUR][1000 genomes]
rs74096103	1.00[EUR][1000 genomes]
rs74098423	1.00[EUR][1000 genomes]
rs74098426	1.00[EUR][1000 genomes]
rs74098430	1.00[EUR][1000 genomes]
rs74098441	1.00[EUR][1000 genomes]
rs74098442	1.00[EUR][1000 genomes]
rs74098443	1.00[EUR][1000 genomes]
rs74098453	1.00[EUR][1000 genomes]
rs74098454	1.00[EUR][1000 genomes]
rs7532040	1.00[EUR][1000 genomes]
rs7544392	1.00[EUR][1000 genomes]
rs9661833	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000325	chr1:85032605-85100748	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85070400-85085200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:85071600-85085000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:85071800-85084800	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:85077200-85085400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr1:85078000-85084800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:85078400-85085200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr1:85078600-85085000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr1:85079000-85085000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:85080200-85086000	Weak transcription	Pancreas	Pancrea
10	chr1:85080200-85086200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:85080400-85084400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:85080400-85085600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:85080600-85085200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:85080800-85084400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:85080800-85086200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr1:85081200-85085200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:85081400-85085200	Weak transcription	Fetal Intestine Small	intestine
18	chr1:85081800-85085000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr1:85082400-85086000	Enhancers	Rectal Smooth Muscle	rectum
20	chr1:85082800-85086200	Enhancers	Stomach Smooth Muscle	stomach
21	chr1:85083000-85084400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr1:85083000-85084800	Weak transcription	Left Ventricle	heart
23	chr1:85083400-85084800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:85083400-85085000	Weak transcription	K562	blood
25	chr1:85083600-85085000	Weak transcription	Fetal Heart	heart
26	chr1:85083800-85085200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr1:85084000-85085000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:85084200-85084800	Enhancers	Brain Substantia Nigra	brain
29	chr1:85084200-85085600	Enhancers	Colon Smooth Muscle	Colon

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