Variant report
Variant | rs12097619 |
---|---|
Chromosome Location | chr1:84933322-84933323 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:84932734..84935177-chr1:84944931..84946479,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000117133 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11163978 | 1.00[YRI][hapmap] |
rs11163984 | 1.00[YRI][hapmap] |
rs11163998 | 1.00[EUR][1000 genomes] |
rs11164002 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11164013 | 1.00[EUR][1000 genomes] |
rs11164022 | 1.00[EUR][1000 genomes] |
rs11164024 | 1.00[EUR][1000 genomes] |
rs11164025 | 1.00[EUR][1000 genomes] |
rs12058889 | 1.00[EUR][1000 genomes] |
rs12058978 | 1.00[EUR][1000 genomes] |
rs12059657 | 1.00[EUR][1000 genomes] |
rs12068340 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12070049 | 1.00[EUR][1000 genomes] |
rs12075688 | 1.00[EUR][1000 genomes] |
rs12076236 | 0.82[YRI][hapmap];1.00[EUR][1000 genomes] |
rs12077315 | 1.00[EUR][1000 genomes] |
rs12084716 | 1.00[EUR][1000 genomes] |
rs12093770 | 1.00[EUR][1000 genomes] |
rs12095492 | 1.00[EUR][1000 genomes] |
rs12095537 | 1.00[EUR][1000 genomes] |
rs12096153 | 1.00[EUR][1000 genomes] |
rs1803276 | 1.00[EUR][1000 genomes] |
rs28667025 | 1.00[EUR][1000 genomes] |
rs28706082 | 1.00[EUR][1000 genomes] |
rs2945131 | 1.00[EUR][1000 genomes] |
rs2945132 | 1.00[EUR][1000 genomes] |
rs2994926 | 1.00[EUR][1000 genomes] |
rs2994927 | 1.00[EUR][1000 genomes] |
rs34317968 | 1.00[AMR][1000 genomes] |
rs72950312 | 1.00[EUR][1000 genomes] |
rs74098423 | 1.00[EUR][1000 genomes] |
rs74098426 | 1.00[EUR][1000 genomes] |
rs74098430 | 1.00[EUR][1000 genomes] |
rs7544392 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv830437 | chr1:84837524-85001269 | Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
No data |