Variant report

Variant	rs34317968
Chromosome Location	chr1:84878177-84878178
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11164002	1.00[AMR][1000 genomes]
rs12068340	1.00[AMR][1000 genomes]
rs12097619	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84874000-84878200	Weak transcription	Psoas Muscle	Psoas
2	chr1:84874200-84878200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:84874400-84878200	Weak transcription	Aorta	Aorta
4	chr1:84875600-84878200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr1:84876800-84878200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:84877000-84880200	Weak transcription	HUVEC	blood vessel
7	chr1:84877800-84878200	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr1:84878000-84878200	Flanking Active TSS	Osteobl	bone
9	chr1:84878000-84878600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:84878000-84878600	Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr1:84878000-84878600	Flanking Active TSS	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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