The 2.0 version of rSNPBase

Variant report

Variant rs28667025
Chromosome Location chr1:85122408-85122409
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85087000-85147400 Weak transcription Gastric stomach
2 chr1:85099000-85123400 Weak transcription H9 Cell Line embryonic stem cell
3 chr1:85099200-85138200 Weak transcription ES-I3 Cell Line embryonic stem cell
4 chr1:85099400-85131200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr1:85099600-85122600 Weak transcription Fetal Brain Male brain
6 chr1:85101000-85123200 Weak transcription Fetal Kidney kidney
7 chr1:85101000-85124400 Weak transcription Hela-S3 cervix
8 chr1:85106200-85140400 Weak transcription NHEK skin
9 chr1:85106400-85155400 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr1:85108000-85123200 Weak transcription Skeletal Muscle Female skeletal muscle
11 chr1:85108000-85155000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr1:85108200-85123400 Weak transcription Esophagus oesophagus
13 chr1:85108200-85128800 Weak transcription GM12878-XiMat blood
14 chr1:85109200-85133000 Weak transcription Pancreas Pancrea
15 chr1:85109600-85123200 Weak transcription Monocytes-CD14+_RO01746 blood
16 chr1:85110200-85123000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr1:85110800-85129400 Strong transcription Fetal Thymus thymus
18 chr1:85111200-85123800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr1:85111400-85128400 Strong transcription HUES48 Cell Line embryonic stem cell
20 chr1:85111400-85131400 Weak transcription HSMM muscle
21 chr1:85111600-85123600 Weak transcription Primary monocytes fromperipheralblood blood
22 chr1:85111600-85127800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
23 chr1:85111800-85152000 Weak transcription Aorta Aorta
24 chr1:85112400-85129000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr1:85112400-85138200 Strong transcription K562 blood
26 chr1:85112600-85130600 Strong transcription iPS-20b Cell Line embryonic stem cell
27 chr1:85113000-85131200 Weak transcription Muscle Satellite Cultured Cells --
28 chr1:85113200-85123200 Weak transcription A549 lung
29 chr1:85113200-85138200 Weak transcription iPS-15b Cell Line embryonic stem cell
30 chr1:85113400-85129200 Weak transcription Fetal Heart heart
31 chr1:85113400-85138200 Weak transcription Primary T killer naive cells fromperipheralblood blood
32 chr1:85113800-85123400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr1:85113800-85126600 Weak transcription Primary T regulatory cells fromperipheralblood blood
34 chr1:85114200-85126600 Weak transcription NH-A brain
35 chr1:85114400-85123400 Weak transcription Skeletal Muscle Male skeletal muscle
36 chr1:85114400-85124000 Weak transcription Rectal Smooth Muscle rectum
37 chr1:85114400-85127600 Weak transcription Primary T killer memory cells from peripheral blood blood
38 chr1:85114400-85130800 Weak transcription Ovary ovary
39 chr1:85114400-85139000 Weak transcription Primary T helper naive cells from peripheral blood blood
40 chr1:85114600-85124200 Weak transcription Brain Angular Gyrus brain
41 chr1:85114600-85130800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr1:85114800-85128000 Strong transcription Primary hematopoietic stem cells short term culture blood
43 chr1:85114800-85128600 Strong transcription Dnd41 blood
44 chr1:85114800-85133000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
45 chr1:85114800-85134000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
46 chr1:85115400-85137800 Weak transcription Small Intestine intestine
47 chr1:85115800-85133800 Weak transcription Lung lung
48 chr1:85116200-85123200 Weak transcription Primary T helper cells PMA-I stimulated --
49 chr1:85116200-85123200 Weak transcription Brain Substantia Nigra brain
50 chr1:85116200-85128600 Weak transcription Fetal Lung lung

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Last update: Aug 31, 2015