Variant report

Variant	rs6665333
Chromosome Location	chr1:85186747-85186748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:84971676..84974840-chr1:85184769..85187020,3	K562	blood:
2	chr1:85150908..85155231-chr1:85184814..85188587,5	K562	blood:
3	chr1:85155152..85157036-chr1:85185986..85188079,2	MCF-7	breast:
4	chr1:85161387..85163713-chr1:85184081..85186777,2	K562	blood:
5	chr1:85153949..85156028-chr1:85184332..85187190,2	K562	blood:

Variant related genes	Relation type
ENSG00000122432	Chromatin interaction
ENSG00000117155	Chromatin interaction
ENSG00000174021	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11163998	1.00[EUR][1000 genomes]
rs11164002	1.00[EUR][1000 genomes]
rs11164013	1.00[EUR][1000 genomes]
rs11164022	1.00[EUR][1000 genomes]
rs11164024	1.00[EUR][1000 genomes]
rs11164025	1.00[EUR][1000 genomes]
rs11807815	1.00[EUR][1000 genomes]
rs12058889	1.00[EUR][1000 genomes]
rs12058978	1.00[EUR][1000 genomes]
rs12059657	1.00[EUR][1000 genomes]
rs12062111	0.87[LWK][hapmap];0.97[MKK][hapmap];1.00[AMR][1000 genomes]
rs12068340	1.00[EUR][1000 genomes]
rs12070049	1.00[EUR][1000 genomes]
rs12075688	1.00[EUR][1000 genomes]
rs12076236	1.00[EUR][1000 genomes]
rs12077315	1.00[EUR][1000 genomes]
rs12080425	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12084716	1.00[EUR][1000 genomes]
rs12091312	0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12092806	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12093770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095492	1.00[EUR][1000 genomes]
rs12095537	1.00[EUR][1000 genomes]
rs12096153	1.00[EUR][1000 genomes]
rs1591972	1.00[EUR][1000 genomes]
rs1803276	1.00[EUR][1000 genomes]
rs28667025	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28706082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2945131	1.00[EUR][1000 genomes]
rs2945132	1.00[EUR][1000 genomes]
rs2994926	1.00[EUR][1000 genomes]
rs2994927	1.00[EUR][1000 genomes]
rs59323332	1.00[AMR][1000 genomes]
rs60192023	1.00[AMR][1000 genomes]
rs6669324	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72950312	1.00[EUR][1000 genomes]
rs74096103	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098433	1.00[AMR][1000 genomes]
rs74098441	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098442	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098443	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098453	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098454	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7517977	0.87[LWK][hapmap];0.97[MKK][hapmap];1.00[AMR][1000 genomes]
rs7532040	0.87[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7544392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9661833	1.00[EUR][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85181800-85190200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:85182000-85189600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr1:85184200-85190000	Enhancers	Fetal Intestine Large	intestine
4	chr1:85184400-85189000	Enhancers	Fetal Intestine Small	intestine
5	chr1:85184600-85187400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:85184600-85187400	Enhancers	Fetal Lung	lung
7	chr1:85184600-85187400	Enhancers	Fetal Muscle Leg	muscle
8	chr1:85184600-85187400	Enhancers	Fetal Stomach	stomach
9	chr1:85184600-85188000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:85184600-85188600	Enhancers	Duodenum Mucosa	Duodenum
11	chr1:85184600-85188800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:85184800-85186800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:85184800-85187600	Enhancers	Brain Germinal Matrix	brain
14	chr1:85184800-85187600	Enhancers	NHLF	lung
15	chr1:85185000-85187200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:85185200-85187400	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr1:85185400-85187200	Enhancers	Fetal Thymus	thymus
18	chr1:85185400-85187600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:85185600-85187000	Enhancers	K562	blood
20	chr1:85185600-85187200	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr1:85185600-85187400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:85185600-85188400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:85185800-85186800	Weak transcription	Osteobl	bone
24	chr1:85185800-85187000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr1:85185800-85187200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:85185800-85187400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr1:85185800-85189800	Enhancers	NHDF-Ad	bronchial
28	chr1:85186000-85187400	Enhancers	NH-A	brain
29	chr1:85186000-85187600	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr1:85186000-85187600	Enhancers	Colon Smooth Muscle	Colon
31	chr1:85186000-85189000	Enhancers	Liver	Liver
32	chr1:85186200-85187000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr1:85186200-85187200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr1:85186200-85187400	Enhancers	Brain Hippocampus Middle	brain
35	chr1:85186200-85187400	Enhancers	Brain Substantia Nigra	brain
36	chr1:85186200-85187600	Enhancers	Primary T cells from cord blood	blood
37	chr1:85186200-85189800	Enhancers	Rectal Smooth Muscle	rectum
38	chr1:85186400-85186800	Weak transcription	Small Intestine	intestine
39	chr1:85186400-85187000	Weak transcription	Fetal Brain Male	brain
40	chr1:85186400-85187200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr1:85186400-85187200	Weak transcription	Thymus	Thymus
42	chr1:85186400-85187400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr1:85186400-85187400	Enhancers	Brain Angular Gyrus	brain
44	chr1:85186400-85187400	Enhancers	Brain Anterior Caudate	brain
45	chr1:85186400-85187400	Enhancers	Brain Cingulate Gyrus	brain
46	chr1:85186400-85187400	Enhancers	Fetal Kidney	kidney
47	chr1:85186400-85187400	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr1:85186400-85188400	Weak transcription	Stomach Mucosa	stomach
49	chr1:85186400-85189000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr1:85186400-85189400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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