Variant report

Variant	rs11165263
Chromosome Location	chr1:95320718-95320719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:95319207..95320829-chr1:95507414..95509861,2	MCF-7	breast:
2	chr1:95319543..95320948-chr1:95506740..95507947,13	MCF-7	breast:
3	chr1:95319172..95320847-chr1:95508664..95509618,15	K562	blood:

rs_ID	r²[population]
rs12039267	1.00[CHB][hapmap]
rs859089	1.00[CHB][hapmap]
rs859095	1.00[CHB][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs11165263	SLC44A3	cis	cerebellar cortex	BrainEAC
rs11165263	SLC44A3	cis	Cerebellum	GTEx

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95301800-95328600	Strong transcription	Fetal Intestine Large	intestine
2	chr1:95312800-95328200	Weak transcription	Fetal Lung	lung
3	chr1:95315200-95328000	Weak transcription	Gastric	stomach
4	chr1:95318600-95322000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr1:95319400-95321400	Enhancers	Fetal Heart	heart
6	chr1:95319600-95322600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:95319800-95320800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:95319800-95320800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:95319800-95320800	Enhancers	Fetal Thymus	thymus
10	chr1:95319800-95320800	Enhancers	Pancreas	Pancrea
11	chr1:95319800-95320800	Enhancers	Spleen	Spleen
12	chr1:95319800-95321000	Enhancers	Lung	lung
13	chr1:95319800-95321200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:95319800-95321400	Enhancers	Duodenum Mucosa	Duodenum
15	chr1:95319800-95321400	Enhancers	NH-A	brain
16	chr1:95320000-95320800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:95320000-95320800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:95320000-95320800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:95320000-95320800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:95320000-95320800	Active TSS	Hela-S3	cervix
21	chr1:95320200-95320800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr1:95320200-95320800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
23	chr1:95320200-95320800	Flanking Active TSS	Fetal Muscle Trunk	muscle
24	chr1:95320200-95321000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr1:95320200-95321000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr1:95320200-95321000	Enhancers	Fetal Stomach	stomach
27	chr1:95320200-95321400	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr1:95320400-95320800	Enhancers	Primary B cells from peripheral blood	blood
29	chr1:95320400-95320800	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr1:95320400-95320800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr1:95320400-95320800	Enhancers	Brain Angular Gyrus	brain
32	chr1:95320400-95320800	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr1:95320400-95320800	Flanking Active TSS	Colonic Mucosa	Colon
34	chr1:95320400-95320800	Weak transcription	Fetal Kidney	kidney
35	chr1:95320400-95320800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr1:95320400-95320800	Enhancers	Dnd41	blood
37	chr1:95320400-95320800	Enhancers	K562	blood
38	chr1:95320400-95321000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr1:95320400-95321000	Flanking Active TSS	Brain Substantia Nigra	brain
40	chr1:95320400-95321000	Strong transcription	Fetal Intestine Small	intestine
41	chr1:95320400-95321200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr1:95320400-95321200	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr1:95320400-95321200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr1:95320400-95321200	Enhancers	Brain Cingulate Gyrus	brain
45	chr1:95320400-95321200	Enhancers	Small Intestine	intestine
46	chr1:95320400-95322000	Enhancers	Stomach Mucosa	stomach
47	chr1:95320400-95322200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr1:95320400-95323000	Enhancers	Placenta	Placenta
49	chr1:95320400-95327800	Weak transcription	HepG2	liver
50	chr1:95320400-95329400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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