Variant report

Variant	rs859095
Chromosome Location	chr1:95333195-95333196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11165263	1.00[CHB][hapmap]
rs12031965	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12039267	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs698956	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs698957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859075	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs859077	0.94[ASN][1000 genomes]
rs859082	1.00[YRI][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs859089	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs859091	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859094	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95327200-95333200	Enhancers	Fetal Stomach	stomach
2	chr1:95327400-95333200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:95328000-95333200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:95329000-95336000	Weak transcription	Gastric	stomach
5	chr1:95329000-95336200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:95329000-95338200	Weak transcription	Esophagus	oesophagus
7	chr1:95329000-95385000	Weak transcription	Colonic Mucosa	Colon
8	chr1:95329800-95333200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:95330000-95333200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:95330000-95344200	Strong transcription	Fetal Intestine Large	intestine
11	chr1:95330600-95333200	Enhancers	Ovary	ovary
12	chr1:95330600-95333200	Enhancers	Stomach Smooth Muscle	stomach
13	chr1:95330600-95333200	Enhancers	NH-A	brain
14	chr1:95330600-95343400	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr1:95330600-95348000	Weak transcription	HepG2	liver
16	chr1:95330800-95333400	Enhancers	Osteobl	bone
17	chr1:95330800-95333800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr1:95330800-95338200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr1:95331000-95336400	Weak transcription	HMEC	breast
20	chr1:95331200-95333200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr1:95331200-95334400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr1:95331200-95334600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:95331200-95338200	Weak transcription	Lung	lung
24	chr1:95331400-95333200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:95331400-95338000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr1:95331400-95338600	Weak transcription	NHEK	skin
27	chr1:95331400-95338800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr1:95331400-95339800	Weak transcription	Fetal Brain Male	brain
29	chr1:95331800-95333200	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr1:95332000-95333200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr1:95332000-95333200	Enhancers	HSMMtube	muscle
32	chr1:95332000-95334400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr1:95332000-95338200	Weak transcription	Placenta	Placenta
34	chr1:95332000-95338800	Weak transcription	Right Ventricle	heart
35	chr1:95332200-95334400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr1:95332200-95336800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr1:95332200-95336800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr1:95332200-95338000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr1:95332400-95334400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr1:95332400-95336800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr1:95332400-95336800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr1:95332400-95338200	Weak transcription	Brain Anterior Caudate	brain
43	chr1:95332600-95333200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr1:95332600-95333200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr1:95332600-95344600	Strong transcription	Duodenum Mucosa	Duodenum
46	chr1:95332800-95333200	Genic enhancers	Rectal Mucosa Donor 31	rectum
47	chr1:95332800-95333200	Enhancers	Small Intestine	intestine
48	chr1:95332800-95333400	Strong transcription	Fetal Intestine Small	intestine
49	chr1:95332800-95334200	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr1:95332800-95334600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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