Variant report

Variant	rs698956
Chromosome Location	chr1:95336793-95336794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:95329686..95331729-chr1:95334435..95337235,2	K562	blood:
2	chr1:95335331..95338153-chr1:95348568..95350195,2	K562	blood:
3	chr1:95335298..95336994-chr1:95340805..95343355,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12031965	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12039267	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs698957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859075	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs859077	0.94[ASN][1000 genomes]
rs859082	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs859089	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs859091	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859094	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859095	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95329000-95338200	Weak transcription	Esophagus	oesophagus
2	chr1:95329000-95385000	Weak transcription	Colonic Mucosa	Colon
3	chr1:95330000-95344200	Strong transcription	Fetal Intestine Large	intestine
4	chr1:95330600-95343400	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr1:95330600-95348000	Weak transcription	HepG2	liver
6	chr1:95330800-95338200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:95331200-95338200	Weak transcription	Lung	lung
8	chr1:95331400-95338000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr1:95331400-95338600	Weak transcription	NHEK	skin
10	chr1:95331400-95338800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr1:95331400-95339800	Weak transcription	Fetal Brain Male	brain
12	chr1:95332000-95338200	Weak transcription	Placenta	Placenta
13	chr1:95332000-95338800	Weak transcription	Right Ventricle	heart
14	chr1:95332200-95336800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:95332200-95336800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:95332200-95338000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr1:95332400-95336800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:95332400-95336800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:95332400-95338200	Weak transcription	Brain Anterior Caudate	brain
20	chr1:95332600-95344600	Strong transcription	Duodenum Mucosa	Duodenum
21	chr1:95333000-95336800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr1:95333000-95337000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr1:95333000-95337200	Weak transcription	Fetal Kidney	kidney
24	chr1:95333000-95338000	Weak transcription	Brain Hippocampus Middle	brain
25	chr1:95333000-95338200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:95333000-95338400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr1:95333000-95338600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr1:95333000-95338600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr1:95333200-95338200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr1:95333200-95338200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr1:95333200-95338200	Weak transcription	Fetal Stomach	stomach
32	chr1:95333200-95338600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr1:95333200-95343400	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr1:95333200-95370000	Weak transcription	Small Intestine	intestine
35	chr1:95334200-95337200	Strong transcription	Pancreas	Pancrea
36	chr1:95334200-95344200	Strong transcription	Fetal Intestine Small	intestine
37	chr1:95334400-95338000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr1:95334600-95336800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr1:95334800-95337400	Enhancers	HSMMtube	muscle
40	chr1:95335200-95336800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr1:95335200-95338200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr1:95336000-95337200	Strong transcription	Gastric	stomach
43	chr1:95336400-95336800	Enhancers	HMEC	breast
44	chr1:95336400-95337200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr1:95336400-95337200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr1:95336400-95337400	Enhancers	NH-A	brain
47	chr1:95336600-95336800	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr1:95336600-95336800	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr1:95336600-95336800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr1:95336600-95337000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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