The 2.0 version of rSNPBase

Variant report

Variant rs12031965
Chromosome Location chr1:95332490-95332491
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:77 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95326600-95332600 Weak transcription Duodenum Mucosa Duodenum
2 chr1:95327200-95333200 Enhancers Fetal Stomach stomach
3 chr1:95327400-95333200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
4 chr1:95327600-95332800 Enhancers HUES64 Cell Line embryonic stem cell
5 chr1:95327600-95332800 Enhancers iPS-15b Cell Line embryonic stem cell
6 chr1:95327800-95333000 Enhancers H9 Cell Line embryonic stem cell
7 chr1:95328000-95333000 Enhancers Fetal Muscle Leg muscle
8 chr1:95328000-95333200 Enhancers HUES48 Cell Line embryonic stem cell
9 chr1:95328400-95333000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr1:95328600-95333000 Enhancers Fetal Adrenal Gland Adrenal Gland
11 chr1:95328800-95333000 Enhancers Fetal Kidney kidney
12 chr1:95329000-95336000 Weak transcription Gastric stomach
13 chr1:95329000-95336200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr1:95329000-95338200 Weak transcription Esophagus oesophagus
15 chr1:95329000-95385000 Weak transcription Colonic Mucosa Colon
16 chr1:95329800-95332800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr1:95329800-95333000 Enhancers Placenta Amnion Placenta Amnion
18 chr1:95329800-95333200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr1:95330000-95332800 Weak transcription Fetal Intestine Small intestine
20 chr1:95330000-95332800 Weak transcription Small Intestine intestine
21 chr1:95330000-95333200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:95330000-95344200 Strong transcription Fetal Intestine Large intestine
23 chr1:95330200-95332800 Strong transcription Rectal Mucosa Donor 31 rectum
24 chr1:95330400-95333000 Enhancers Aorta Aorta
25 chr1:95330600-95333000 Enhancers Brain Hippocampus Middle brain
26 chr1:95330600-95333000 Enhancers Colon Smooth Muscle Colon
27 chr1:95330600-95333000 Enhancers NHLF lung
28 chr1:95330600-95333200 Enhancers Ovary ovary
29 chr1:95330600-95333200 Enhancers Stomach Smooth Muscle stomach
30 chr1:95330600-95333200 Enhancers NH-A brain
31 chr1:95330600-95343400 Strong transcription Rectal Mucosa Donor 29 rectum
32 chr1:95330600-95348000 Weak transcription HepG2 liver
33 chr1:95330800-95333000 Enhancers Brain Angular Gyrus brain
34 chr1:95330800-95333000 Enhancers Brain Cingulate Gyrus brain
35 chr1:95330800-95333000 Enhancers Rectal Smooth Muscle rectum
36 chr1:95330800-95333400 Enhancers Osteobl bone
37 chr1:95330800-95333800 Enhancers Cortex derived primary cultured neurospheres brain
38 chr1:95330800-95338200 Weak transcription Fetal Muscle Trunk muscle
39 chr1:95331000-95333000 Enhancers ES-I3 Cell Line embryonic stem cell
40 chr1:95331000-95333000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr1:95331000-95336400 Weak transcription HMEC breast
42 chr1:95331200-95332600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr1:95331200-95332600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr1:95331200-95332800 Weak transcription Pancreas Pancrea
45 chr1:95331200-95333000 Enhancers iPS-20b Cell Line embryonic stem cell
46 chr1:95331200-95333000 Enhancers Muscle Satellite Cultured Cells --
47 chr1:95331200-95333000 Weak transcription Psoas Muscle Psoas
48 chr1:95331200-95333000 Enhancers HSMM muscle
49 chr1:95331200-95333000 Enhancers NHDF-Ad bronchial
50 chr1:95331200-95333200 Enhancers iPS-18 Cell Line embryonic stem cell

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Last update: Aug 31, 2015