Variant report

Variant	rs859075
Chromosome Location	chr1:95349272-95349273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95348432..95350696-chr1:95351347..95353211,2	K562	blood:
2	chr1:95335331..95338153-chr1:95348568..95350195,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12031965	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12039267	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs698956	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs698957	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs859077	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[ASN][1000 genomes]
rs859079	0.81[AMR][1000 genomes]
rs859082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs859089	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs859091	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs859094	0.87[ASN][1000 genomes]
rs859095	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95329000-95385000	Weak transcription	Colonic Mucosa	Colon
2	chr1:95333200-95370000	Weak transcription	Small Intestine	intestine
3	chr1:95339800-95349400	Weak transcription	Aorta	Aorta
4	chr1:95340200-95361200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:95342600-95356000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:95342800-95349600	Weak transcription	Gastric	stomach
7	chr1:95343000-95349400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:95343400-95350000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:95343400-95361400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:95344000-95349600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:95344600-95356000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr1:95346400-95353800	Strong transcription	Fetal Intestine Small	intestine
13	chr1:95347000-95350800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr1:95347200-95349400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:95347800-95350000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr1:95347800-95354800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:95348000-95350800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:95348000-95354400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr1:95348200-95352400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr1:95348400-95349400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:95348400-95349600	Weak transcription	Fetal Intestine Large	intestine
22	chr1:95348400-95350600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr1:95348400-95360200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr1:95348600-95350000	Enhancers	Primary T cells fromperipheralblood	blood
25	chr1:95348600-95350000	Enhancers	Fetal Muscle Trunk	muscle
26	chr1:95348600-95350000	Enhancers	Fetal Thymus	thymus
27	chr1:95348600-95350400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr1:95348600-95350400	Enhancers	Esophagus	oesophagus
29	chr1:95348600-95351000	Enhancers	NHLF	lung
30	chr1:95348600-95351600	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr1:95348800-95349400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
32	chr1:95348800-95349400	Enhancers	Brain Hippocampus Middle	brain
33	chr1:95348800-95349600	Enhancers	Brain Anterior Caudate	brain
34	chr1:95348800-95350200	Enhancers	Stomach Mucosa	stomach
35	chr1:95348800-95350400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr1:95348800-95350400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr1:95348800-95350400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr1:95348800-95350600	Enhancers	Placenta	Placenta
39	chr1:95348800-95351400	Enhancers	Ovary	ovary
40	chr1:95348800-95351400	Enhancers	HSMMtube	muscle
41	chr1:95348800-95354800	Enhancers	H1 Cell Line	embryonic stem cell
42	chr1:95348800-95354800	Enhancers	Fetal Muscle Leg	muscle
43	chr1:95348800-95360800	Weak transcription	Lung	lung
44	chr1:95349000-95349400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
45	chr1:95349000-95349400	Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr1:95349000-95349400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr1:95349000-95349400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr1:95349000-95349400	Flanking Active TSS	Osteobl	bone
49	chr1:95349000-95349600	Enhancers	Fetal Lung	lung
50	chr1:95349000-95349600	Flanking Active TSS	NHDF-Ad	bronchial

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