Variant report

Variant	rs11167700
Chromosome Location	chr5:154162751-154162752
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154154220..154157426-chr5:154161456..154164339,3	MCF-7	breast:
2	chr5:154160953..154164560-chr5:154213989..154217454,3	K562	blood:
3	chr5:154161718..154166122-chr5:154172267..154174755,4	MCF-7	breast:
4	chr5:154069246..154072134-chr5:154161988..154164384,2	K562	blood:
5	chr1:152014558..152016795-chr5:154161907..154163941,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction
ENSG00000170271	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2278223	0.85[YRI][hapmap]
rs62382162	0.81[AMR][1000 genomes]
rs7726729	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830521	chr5:154147567-154244266	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv965536	chr5:154155200-154163441	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154151200-154162800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:154151600-154163000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:154151600-154163400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr5:154151600-154171200	Weak transcription	Fetal Brain Male	brain
5	chr5:154152600-154168200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr5:154152600-154168400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr5:154156000-154163400	Weak transcription	Brain Germinal Matrix	brain
8	chr5:154157800-154164200	Enhancers	Liver	Liver
9	chr5:154157800-154168000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:154157800-154168200	Enhancers	Primary T cells fromperipheralblood	blood
11	chr5:154157800-154168200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr5:154157800-154168400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr5:154158000-154163800	Enhancers	Duodenum Mucosa	Duodenum
14	chr5:154158000-154164200	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr5:154158000-154168200	Enhancers	Left Ventricle	heart
16	chr5:154158000-154168400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr5:154158200-154168200	Enhancers	Spleen	Spleen
18	chr5:154158800-154168200	Enhancers	Pancreas	Pancrea
19	chr5:154159000-154166800	Weak transcription	HUVEC	blood vessel
20	chr5:154159000-154168000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr5:154159200-154163200	Weak transcription	NH-A	brain
22	chr5:154159400-154164000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr5:154159400-154167800	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr5:154159400-154168200	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr5:154159600-154168200	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr5:154159800-154167400	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr5:154159800-154168400	Strong transcription	Dnd41	blood
28	chr5:154160000-154164800	Weak transcription	Hela-S3	cervix
29	chr5:154160200-154163000	Enhancers	HepG2	liver
30	chr5:154160200-154163400	Weak transcription	Fetal Thymus	thymus
31	chr5:154160400-154168200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr5:154160600-154164600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr5:154160600-154165000	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr5:154160600-154165000	Enhancers	Small Intestine	intestine
35	chr5:154161200-154163000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr5:154161200-154164000	Enhancers	Muscle Satellite Cultured Cells	--
37	chr5:154161200-154165200	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr5:154161200-154167600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr5:154161200-154168000	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr5:154161200-154168000	Enhancers	Stomach Mucosa	stomach
41	chr5:154161200-154168400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr5:154161200-154168600	Enhancers	Fetal Heart	heart
43	chr5:154161400-154163000	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr5:154161400-154163000	Enhancers	HSMM	muscle
45	chr5:154161400-154163200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr5:154161400-154164000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr5:154161400-154164000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr5:154161400-154164400	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr5:154161400-154164600	Enhancers	H1 Cell Line	embryonic stem cell
50	chr5:154161400-154164800	Enhancers	Adipose Nuclei	Adipose

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